Gene detail information of Glyur000382s00020375.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03050.1 | 0 | cellulose synthase-like D3 |
| NR | XP_004505600.1 | 0 | PREDICTED: cellulose synthase-like protein D3-like isoform X1 [Cicer arietinum] |
| COG | NP_487797.1 | 3.00E-17 | cellulose synthase catalytic subunit [Nostoc sp. PCC 7120] |
| Swissprot | tr|Q9M9M4|CSLD3_ARATH | 0 | Cellulose synthase-like protein D3 |
| trEMBL | tr|K7K5F4|K7K5F4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44281.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00382 | 92747 | 111260 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000382s00020375.3 | PF14570.1 | zf-RING_4 | 131 | 180 | 3.00E-16 |
| Glyur000382s00020375.3 | PF03552.9 | Cellulose_synt | 376 | 1136 | 0 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.536 |
| SRR1783600 | control | 10.382 |
| SRR1783602 | moderate drought stress | 4.609 |
| SRR1811619 | moderate drought stress | 4.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.748 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.650 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.825 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.705 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.203 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.058 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.421 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.754 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.073 |
| SRR2967015 | Control (Tissue:root) | 18.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.608 |
| SRR9715740 | Leave | 0.062 |
| SRR9715741 | Leave | 1.055 |
| SRR9715739 | Root | 7.696 |
| SRR9715742 | Root | 4.533 |
| SRR9715743 | Root | 4.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.037 |
| SRR8749028 | MeJA induced 9h | 12.141 |
| SRR8749029 | MeJA induced 9h | 7.140 |
| SRR8749030 | Uninduced | 10.625 |
| SRR8749031 | Uninduced | 1.712 |
| SRR8749032 | Uninduced | 2.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.953 |
| SRR8400027 | Control-Root | 20.295 |