Gene detail information of Glyur000382s00020376.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16910.1 | 1.00E-131 | cellulose-synthase like D2 |
| NR | XP_004505600.1 | 9.12E-163 | PREDICTED: cellulose synthase-like protein D3-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9LFL0|CSLD2_ARATH | 8.00E-155 | Cellulose synthase-like protein D2 |
| trEMBL | tr|V7AF90|V7AF90_PHAVU | 5.00E-162 | Uncharacterized protein {ECO:0000313|EMBL:ESW03518.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00382 | 97411 | 98429 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000382s00020376.1 | PF03552.9 | Cellulose_synt | 3 | 115 | 1.50E-43 |
| Glyur000382s00020376.1 | PF03552.9 | Cellulose_synt | 146 | 287 | 2.50E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.220 |
| SRR1783600 | control | 5.228 |
| SRR1783602 | moderate drought stress | 1.406 |
| SRR1811619 | moderate drought stress | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.944 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.496 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.252 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.547 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.398 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.516 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.862 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.308 |
| SRR2967015 | Control (Tissue:root) | 0.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.155 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.448 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.302 |
| SRR9715743 | Root | 0.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.330 |
| SRR8749028 | MeJA induced 9h | 0.252 |
| SRR8749029 | MeJA induced 9h | 0.172 |
| SRR8749030 | Uninduced | 0.836 |
| SRR8749031 | Uninduced | 0.067 |
| SRR8749032 | Uninduced | 0.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.814 |
| SRR8400027 | Control-Root | 2.413 |