Gene detail information of Glyur000382s00020381.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16890.1 | 0 | Exostosin family protein |
| NR | XP_004505598.1 | 0 | PREDICTED: probable glucuronoxylan glucuronosyltransferase F8H-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q6DBG8|ARAD1_ARATH | 1.00E-75 | Probable arabinosyltransferase ARAD1 |
| trEMBL | tr|G7JSR8|G7JSR8_MEDTR | 0 | Exostosin family protein {ECO:0000313|EMBL:AES89625.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00382 | 140186 | 145465 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000382s00020381.1 | PF03016.10 | Exostosin | 116 | 426 | 3.60E-72 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.069 |
| SRR1783600 | control | 24.718 |
| SRR1783602 | moderate drought stress | 23.565 |
| SRR1811619 | moderate drought stress | 24.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.038 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.442 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.477 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.874 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.614 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.952 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.438 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.972 |
| SRR2967015 | Control (Tissue:root) | 25.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.252 |
| SRR9715740 | Leave | 13.178 |
| SRR9715741 | Leave | 17.733 |
| SRR9715739 | Root | 9.369 |
| SRR9715742 | Root | 16.854 |
| SRR9715743 | Root | 13.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.943 |
| SRR8749028 | MeJA induced 9h | 26.927 |
| SRR8749029 | MeJA induced 9h | 18.025 |
| SRR8749030 | Uninduced | 10.817 |
| SRR8749031 | Uninduced | 8.808 |
| SRR8749032 | Uninduced | 8.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 34.824 |
| SRR8400027 | Control-Root | 32.180 |