Gene detail information of Glyur000382s00020385.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16820.2 | 3.00E-80 | heat shock factor 3 |
| NR | XP_003607433.1 | 0 | Heat stress transcription factor A-1 [Medicago truncatula] |
| Swissprot | tr|Q84T61|HSFA1_ORYSJ | 2.00E-143 | Heat stress transcription factor A-1 |
| trEMBL | tr|G7JSS3|G7JSS3_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK43715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00382 | 158536 | 161940 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000382s00020385.1 | PF00447.12 | HSF_DNA-bind | 13 | 121 | 6.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.326 |
| SRR1783600 | control | 5.282 |
| SRR1783602 | moderate drought stress | 6.891 |
| SRR1811619 | moderate drought stress | 6.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.281 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.304 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.604 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.766 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.545 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.712 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.459 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.161 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.925 |
| SRR2967015 | Control (Tissue:root) | 14.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.682 |
| SRR9715740 | Leave | 5.991 |
| SRR9715741 | Leave | 5.212 |
| SRR9715739 | Root | 2.746 |
| SRR9715742 | Root | 8.126 |
| SRR9715743 | Root | 5.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.057 |
| SRR8749028 | MeJA induced 9h | 8.116 |
| SRR8749029 | MeJA induced 9h | 5.065 |
| SRR8749030 | Uninduced | 8.188 |
| SRR8749031 | Uninduced | 6.584 |
| SRR8749032 | Uninduced | 7.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.958 |
| SRR8400027 | Control-Root | 6.419 |