Gene detail information of Glyur000383s00019449.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G40070.1 | 6.00E-17 | RING/U-box superfamily protein |
| NR | XP_003556277.1 | 9.96E-147 | PREDICTED: RING-H2 finger protein ATL32-like [Glycine max] |
| Swissprot | tr|Q8W571|ATL32_ARATH | 4.00E-19 | RING-H2 finger protein ATL32 (Precursor) |
| trEMBL | tr|I1NHN5|I1NHN5_SOYBN | 4.00E-147 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G32920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00383 | 33767 | 36258 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000383s00019449.1 | PF13639.1 | zf-RING_2 | 86 | 129 | 3.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.006 |
| SRR1783600 | control | 48.304 |
| SRR1783602 | moderate drought stress | 31.559 |
| SRR1811619 | moderate drought stress | 28.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.669 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.509 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.480 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.955 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.969 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.017 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.756 |
| SRR2967015 | Control (Tissue:root) | 21.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.337 |
| SRR9715740 | Leave | 10.098 |
| SRR9715741 | Leave | 8.082 |
| SRR9715739 | Root | 9.432 |
| SRR9715742 | Root | 10.456 |
| SRR9715743 | Root | 9.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.953 |
| SRR8749028 | MeJA induced 9h | 7.730 |
| SRR8749029 | MeJA induced 9h | 6.267 |
| SRR8749030 | Uninduced | 6.980 |
| SRR8749031 | Uninduced | 2.014 |
| SRR8749032 | Uninduced | 1.175 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.859 |
| SRR8400027 | Control-Root | 31.216 |