Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000383s00019462.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45560.1	1.00E-106	cytochrome P450, family 76, subfamily C, polypeptide 1
NR	XP_003536316.1	0	PREDICTED: geraniol 8-hydroxylase-like [Glycine max]
COG	YP_004643624.1	2.00E-37	cytochrome P450 hydroxylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q8VWZ7\|C76B6_CATRO	3.00E-175	Geraniol 8-hydroxylase
trEMBL	tr\|K7LKI8\|K7LKI8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G34850.2}

Sequence

Transcript Sequence

>Glyur000383s00019462.1
ATGGAGTTTGTAACTTGTGCATTACTCCTCCTCTTGACATGCGCAACCATCCATGCTCTTGTTAGAATATTAACCAGAAAACCAAACCAAAAGCTTCCACCAGGGCCTTCCCCTTTCCCCATAATTGGAAACCTCCTTGAGCTTGGACAAAAGCCACACCAATCCATGGCCAAGCTAGCCAAGGTTCATGGCCCAGTGATGAGCCTGAAGCTAGGCAGAGTAACCACCGTGGTTATATCTTCAGCTGAGATGGCCAAAGAAGTGCTCCTAACCCATGACCACTTCCTCTCAGACAGACCCATTCCCCAATCCGTATCAGTTCTCAACCACGAGCACTATACCCTTGCCTTCATACCTGTTTCACCTCTTTGGAAGGAATTGAGAAAGATATGCAACACTCAGTTATTTGCCCACAAGACTCTTGATGCCAGCCAAGACGTGAGGCGCAAGAAAGTGCAACAACTACTCCATGATGTGCATAGAAGTAGCCAAATTGGTGAAGCTGTGGATATTGGAAGAGAAGCGTTCAAGACCACCATAAACTTGTTGTCCAACTCCATTTTCTCTGAGGACTTGGTTCTGTCCACGGGTACTGCAGGGGAGTTCAAGGACTTGGTGACAAACATCACGAAACTTGTTGGATCACCAAACATAGCAGAGTATTTCCCTTTGCTTAGGAAAATTGACCCCCAGGGTGTGAAGAGACAACAAACTAAGAACGTTGCCAAGGATCTTTTTGTTGCGGGAACGGACACGACAACTTCAACGCTAGAATGGGCAATGACGGAACTAGTAATCAACCCAGAGATAATGTCAAAGGCGAAAAAGGAGCTAGAAGAAGTCATAGGAAAAGGCAAACCCATTGAAGAATCAGATATTGCTAGACTCCCTTACTTGCAAGCAATCATAAAAGAGACGTTCCGCTTGCACCCTCCAGTTCCTCTGTTGCTCCCTCGAAAAGNAGCAAAAGATGTGGAGATATGTGGACTCACCATCCCAAAGGATGCACAAGTGATGGTTAATGTGTGGACTATTGGTAGGGATCCAACCTTGTGGGAAAACCCAACTCTGTTCTCACCAGAGAGGTTCCTTGAGTCGGAGATTGATGTCAAGGGTCGGAATTTTGAGCTTGCACCATTTGGTGCTGGGAGGAGGATATGCCCTGGCATGGTGTTGGCTCTAAGGATGTTGNTATTGATGTTGGGTTCACTTGTTAACTCCTTTGATTGGAGACTTGAAGATGGAATGAAACTAGAAGATTTGGACATGGAAGAGAAATTTGGAATCACCTTGCAAAAGGCTCAACCCCTTCGTGTTGTTCCTGTTCAGATATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00383	126236	128074	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP76C1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000383s00019462.1	PF00067.17	p450	33	231	3.50E-28
Glyur000383s00019462.1	PF00067.17	p450	233	431	8.10E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.989
SRR1783600	control	11.358
SRR1783602	moderate drought stress	11.788
SRR1811619	moderate drought stress	11.463

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.162
DRR006520	Root Summer glycyrrhizin high producing strain	0.105
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.165
DRR006524	Root Summer glycyrrhizin low producing strain	0.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	26.110
SRR2868004	Drought Stress(Tissue:root)	108.519
SRR2967015	Control (Tissue:root)	62.695

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.100
SRR9715740	Leave	0.047
SRR9715741	Leave	0.076
SRR9715739	Root	8.604
SRR9715742	Root	11.598
SRR9715743	Root	10.588

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.385
SRR8749028	MeJA induced 9h	2.354
SRR8749029	MeJA induced 9h	1.185
SRR8749030	Uninduced	27.418
SRR8749031	Uninduced	9.948
SRR8749032	Uninduced	0.986

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	27.116
SRR8400027	Control-Root	21.747