Gene detail information of Glyur000384s00022268.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G24260.1 | 3.00E-98 | K-box region and MADS-box transcription factor family protein |
| NR | XP_006579436.1 | 1.23E-164 | PREDICTED: uncharacterized protein LOC100805078 isoform X4 [Glycine max] |
| Swissprot | tr|O65874|MTF1_PEA | 2.00E-157 | MADS-box transcription factor 1 |
| trEMBL | tr|I1K3N9|I1K3N9_SOYBN | 5.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G28140.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00384 | 4976 | 10820 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000384s00022268.1 | PF00319.13 | SRF-TF | 9 | 59 | 3.20E-29 |
| Glyur000384s00022268.1 | PF01486.12 | K-box | 84 | 174 | 4.70E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.017 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.206 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.719 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.322 |
| SRR9715740 | Leave | 0.406 |
| SRR9715741 | Leave | 0.179 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.629 |
| SRR8749028 | MeJA induced 9h | 7.576 |
| SRR8749029 | MeJA induced 9h | 3.580 |
| SRR8749030 | Uninduced | 8.650 |
| SRR8749031 | Uninduced | 2.875 |
| SRR8749032 | Uninduced | 4.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.395 |
| SRR8400027 | Control-Root | 0.206 |