Gene detail information of Glyur000384s00022279.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27340.1 | 2.00E-172 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_004502284.1 | 0 | PREDICTED: F-box only protein 6-like [Cicer arietinum] |
| Swissprot | tr|Q9FZK1|FBX6_ARATH | 0 | F-box only protein 6 |
| trEMBL | tr|I1LN68|I1LN68_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G36960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00384 | 76530 | 80648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000384s00022279.1 | PF00646.28 | F-box | 125 | 164 | 3.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.321 |
| SRR1783600 | control | 13.450 |
| SRR1783602 | moderate drought stress | 12.476 |
| SRR1811619 | moderate drought stress | 11.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.588 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.187 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.132 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.143 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.220 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.566 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.469 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.204 |
| SRR2967015 | Control (Tissue:root) | 21.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.424 |
| SRR9715740 | Leave | 14.073 |
| SRR9715741 | Leave | 11.083 |
| SRR9715739 | Root | 19.664 |
| SRR9715742 | Root | 7.704 |
| SRR9715743 | Root | 10.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.048 |
| SRR8749028 | MeJA induced 9h | 16.008 |
| SRR8749029 | MeJA induced 9h | 7.395 |
| SRR8749030 | Uninduced | 6.681 |
| SRR8749031 | Uninduced | 2.611 |
| SRR8749032 | Uninduced | 4.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.984 |
| SRR8400027 | Control-Root | 17.522 |