Gene detail information of Glyur000384s00022282.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43270.3 | 3.00E-41 | squamosa promoter binding protein-like 2 |
| NR | XP_006601888.1 | 0 | PREDICTED: squamosa promoter-binding-like protein 12-like isoform X1 [Glycine max] |
| Swissprot | tr|A2YGR5|SPL12_ORYSI | 3.00E-68 | Squamosa promoter-binding-like protein 12 |
| trEMBL | tr|K7MP80|K7MP80_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G00903.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00384 | 101998 | 107897 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
| EAR motif-containing Proteins | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000384s00022282.1 | PF03110.9 | SBP | 173 | 249 | 5.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.832 |
| SRR1783600 | control | 7.503 |
| SRR1783602 | moderate drought stress | 12.062 |
| SRR1811619 | moderate drought stress | 11.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.085 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.170 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.938 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.078 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.292 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.947 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.664 |
| SRR2868004 | Drought Stress(Tissue:root) | 19.298 |
| SRR2967015 | Control (Tissue:root) | 20.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.374 |
| SRR9715740 | Leave | 10.724 |
| SRR9715741 | Leave | 9.239 |
| SRR9715739 | Root | 0.562 |
| SRR9715742 | Root | 6.497 |
| SRR9715743 | Root | 4.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.820 |
| SRR8749028 | MeJA induced 9h | 31.956 |
| SRR8749029 | MeJA induced 9h | 26.464 |
| SRR8749030 | Uninduced | 8.996 |
| SRR8749031 | Uninduced | 3.713 |
| SRR8749032 | Uninduced | 4.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.498 |
| SRR8400027 | Control-Root | 15.967 |