Gene detail information of Glyur000385s00019795.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G24640.1 | 4.00E-180 | ubiquitin-specific protease 19 |
| NR | KHN37220.1 | 0 | Ubiquitin carboxyl-terminal hydrolase 19 [Glycine soja] |
| Swissprot | tr|Q9SJA1|UBP19_ARATH | 0 | Ubiquitin carboxyl-terminal hydrolase 19 |
| trEMBL | tr|I1K8J2|I1K8J2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G06170.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00385 | 35244 | 47066 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000385s00019795.1 | PF00443.24 | UCH | 168 | 484 | 1.30E-47 |
| Glyur000385s00019795.1 | PF00646.28 | F-box | 718 | 758 | 1.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.467 |
| SRR1783600 | control | 3.412 |
| SRR1783602 | moderate drought stress | 4.164 |
| SRR1811619 | moderate drought stress | 4.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.998 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.163 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.591 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.381 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.880 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.711 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.261 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.384 |
| SRR2967015 | Control (Tissue:root) | 18.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.396 |
| SRR9715740 | Leave | 6.314 |
| SRR9715741 | Leave | 7.938 |
| SRR9715739 | Root | 4.628 |
| SRR9715742 | Root | 8.052 |
| SRR9715743 | Root | 7.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 40.628 |
| SRR8749028 | MeJA induced 9h | 18.782 |
| SRR8749029 | MeJA induced 9h | 10.280 |
| SRR8749030 | Uninduced | 7.581 |
| SRR8749031 | Uninduced | 3.072 |
| SRR8749032 | Uninduced | 2.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.721 |
| SRR8400027 | Control-Root | 12.687 |