Gene detail

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Gene detail information of Glyur000385s00019797.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26250.1	0	3-ketoacyl-CoA synthase 10
NR	XP_003603250.1	0	3-ketoacyl-CoA synthase [Medicago truncatula]
COG	YP_007378303.1	2.00E-13	naringenin-chalcone synthase [Nonlabens dokdonensis DSW-6]
Swissprot	tr\|Q9LLE8\|KCS10_ARATH	0	3-ketoacyl-CoA synthase 10
trEMBL	tr\|G7J960\|G7J960_MEDTR	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000385s00019797.1
GGACACAATACAATACAAACACAACACAATAATAGTATAACCGGTTCAGTTTCCGCAATGGCTAGTAGTGAACGAGACATGTTCTCAGCAGAGATTGTGAACCGTGGGATTGAATCATCTGGACCCAACGCGGGTTCATTGACGTTCTCGGTGAGGGTGAGGAGGCGCCTCCCAGATTTTCTTCAATCGGTGAACCTCAAGTACGTGAAGTTGGGTTACCATTACCTCATAAACCATGGCGTTTACTTGTTCACCATACCGGTTCTTCTGGTGGTGTTCAGTGCTGAGGTTGGTAGCCTCAGTAAAGAGGACCTGTGGAAGAAGCTGTGGGAAGANGCGAGTTACGACCTTGCCTCTGTTCTCTCTTCTCTTGCTGTCTTCGTTTTCACCTTCTCCGTCTACTTCATGTCGAGGCCACGTCCCATTTACCTCATNGATTTTGCATGCTTTCGACCCCATGATGATCTCAAGGTATCAAGGGAACAGTTCATAGAGCTAGCAAGAAAATCTGGAAAGTTCGACGAAGGAAGCCTGGAGTTTCAGAAGAGGATGATAATGTCATCAGGGATAGGTGACGAGACATACATCCCAAAATCAGTGACATCGTCGAGCGAAAACACAGCAACAATGAAAGAAGGGCGTGCAGAGGCATCAATGGTAATGTTCGGAGCCCTCGACGAACTGTTCGAGAAAACAGGGGTTCGTCCAAAAGACGTTGGTGTTCTTGTTGTGAACTGCAGCATCTTCAACCCAACACCGTCACTGTCGGCGATGATCATAAACCATTACAAGATGAGGGGGAACATACTGAGCTACAACTTGGGAGGGATGGGTTGTAGTGCTGGGATTATTGGTGTGGATTTGGCGAGGGATATACTTCAGGCTAACCCAAACAACTATGCGGTTGTTGTGAGCACTGAGATGGTTGGGTTTAATTGGTACCAAGGGAAAGAAAGATCGATGCTCATTCCTAACTGTTTCTTTCGCATGGGTTGCTCTGCTCTTTTGCTCTCTAACCGTCGTCGTGACTATGGCCGTGCCAAATACCGTCTCGAACACATTGTTCGCACTCACAAAGGTGCCGATGACCGCAGCTTCAGGTGTGTGTACCAAGAGGAAGACGATAAAAAATTCAAGGGACTAAAGATTAGCAAAGACTTGATTGAGATTGGTGGTGAAGCTCTCAAAACCAACATCACTACACTAGGACCCTTGGTGCTACCCTTTTCAGAGCAGCTTCTATTCTTTGGCACCCTAGTGTGGAGGCACTTATTTGGTGGCAAATCTGGTGGTGGTGGTGGGAATTCACCCTCATCAACAAAACCATACATCCCCAACTACAAACTTGCTTTTGAGCATTTCTGTGTGCATGCTGCAAGCAAGGCCATCCTTGATGAGCTACAGAAGAATCTGGAACTGAGTGACAAGAACATAGAGGCATCTAGGATGACACTGCACCGTTTTGGTAANACATCTAGCAGCAGCATTTGGTATGAGCTGGCTTACATGGAAGCTAAAGAAAAAGTGAGAAGAGGGGACCGTGTTTGGCAACTTGCTTTTGGTTCTGGATTCAAGTGTAACAGTGCTGTTTGGCGTTCCATGCGCCGAGTCAACAAGCCTTCTAGCAAGAACCCTTGGCTTGACTGCATCAACAGATACCCCGTGTAGTACTCGTNAAGGAATTAAAAGTACCGTGATGATAAGAAGAAAGCTGTGTTTTAGNATCAATAATGGTAGTTGTTCTAAGTTGGTCTTTCAATTTTAAGACTGCTTAATTGTTCTTTCTCATTTTATATTCTGGCTTAAATTGCATACTCTTACTGTGGCATTTAGCTAGCATGCCCTTTGCTTCTCTGTTTCTTAATTTATAGCACGGTATCAAATTATCAATATAGTCAATGCTGGATTTGGCTTCTCTTAAGTGAACAATTCACTTAAAAAGGCTAAAGTAAGTAATTACATGTATAATTTGTTAAGCATGTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00385	61241	67036	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0003824 catalytic activity GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000385s00019797.1	PF08392.7	FAE1_CUT1_RppA	115	404	3.00E-136
Glyur000385s00019797.1	PF08541.5	ACP_syn_III_C	433	513	3.40E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.163
DRR006520	Root Summer glycyrrhizin high producing strain	0.162
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.055
DRR006524	Root Summer glycyrrhizin low producing strain	0.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.648

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.107
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.064

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	72.946
SRR9715740	Leave	35.056
SRR9715741	Leave	44.041
SRR9715739	Root	0.000
SRR9715742	Root	6.234
SRR9715743	Root	6.045

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.031
SRR8749030	Uninduced	0.032
SRR8749031	Uninduced	0.251
SRR8749032	Uninduced	0.258

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.133
SRR8400027	Control-Root	6.407