Gene detail information of Glyur000385s00019802.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26260.103beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
NRXP_004501411.10PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like [Cicer arietinum]
COGYP_002604520.13.00E-543-beta hydroxysteroid dehydrogenase/isomerase family protein [Desulfobacterium autotrophicum HRM2]
Swissprottr|Q67ZE1|HSDD2_ARATH03beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
trEMBLtr|G7J951|G7J951_MEDTR03beta-hydroxysteroid-dehydrogenase/decarboxylase {ECO:0000313|EMBL:AES73492.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0038596303103211+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K07748E1.1.1.170, NSDHL, ERG26 EC:1.1.1.170 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006694  steroid biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003854  3-beta-hydroxy-delta5-steroid dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000385s00019802.1PF01073.143Beta_HSD92768.90E-67
Glyur000385s00019802.1PF02453.12Reticulon3745191.70E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.773
SRR1783600control16.957
SRR1783602moderate drought stress12.895
SRR1811619moderate drought stress12.784

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.428
DRR006520Root Summer glycyrrhizin high producing strain14.008
DRR006521Root Winter glycyrrhizin high producing strain5.790
DRR006522Root Winter glycyrrhizin high producing strain5.721
DRR006523Root Summer glycyrrhizin low producing strain11.634
DRR006524Root Summer glycyrrhizin low producing strain11.845
DRR006525Leaf Summer glycyrrhizin high producing strain5.323
DRR006526Leaf Summer glycyrrhizin high producing strain5.042

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.047
SRR2868004Drought Stress(Tissue:root)26.974
SRR2967015Control (Tissue:root)27.388

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.681
SRR9715740Leave4.747
SRR9715741Leave5.951
SRR9715739Root8.707
SRR9715742Root11.825
SRR9715743Root10.464

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.786
SRR8749028MeJA induced 9h16.074
SRR8749029MeJA induced 9h13.505
SRR8749030Uninduced4.019
SRR8749031Uninduced2.208
SRR8749032Uninduced3.834

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.787
SRR8400027Control-Root31.374

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved