Gene detail information of Glyur000385s00019807.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19260.13.00E-07RING/FYVE/PHD zinc finger superfamily protein
NRXP_003602916.14.71E-76PHD and RING finger domain-containing protein [Medicago truncatula]
trEMBLtr|G7J542|G7J542_MEDTR3.00E-76PHD-finger protein {ECO:0000313|EMBL:AES73167.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00385127452132102+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000385s00019807.1PF00628.24PHD1622082.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.518
SRR1783600control4.333
SRR1783602moderate drought stress7.232
SRR1811619moderate drought stress7.826

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.986
DRR006520Root Summer glycyrrhizin high producing strain8.408
DRR006521Root Winter glycyrrhizin high producing strain0.725
DRR006522Root Winter glycyrrhizin high producing strain0.840
DRR006523Root Summer glycyrrhizin low producing strain2.714
DRR006524Root Summer glycyrrhizin low producing strain2.865
DRR006525Leaf Summer glycyrrhizin high producing strain0.766
DRR006526Leaf Summer glycyrrhizin high producing strain0.375

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.907
SRR2868004Drought Stress(Tissue:root)2.365
SRR2967015Control (Tissue:root)2.826

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.394
SRR9715740Leave0.435
SRR9715741Leave0.535
SRR9715739Root2.379
SRR9715742Root6.555
SRR9715743Root6.319

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.657
SRR8749028MeJA induced 9h5.008
SRR8749029MeJA induced 9h5.588
SRR8749030Uninduced4.431
SRR8749031Uninduced1.076
SRR8749032Uninduced1.592

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.426
SRR8400027Control-Root4.411

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved