Gene detail information of Glyur000385s00019808.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G43920.30dicer-like 3
NRXP_004501416.10PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum]
COGNP_112009.13.00E-27RNA helicase (ERCC4-like) [Thermoplasma volcanium GSS1]
Swissprottr|Q5N870|DCL3A_ORYSJ0Endoribonuclease Dicer homolog 3a
trEMBLtr|G7J946|G7J946_MEDTR0Endoribonuclease dicer-like protein {ECO:0000313|EMBL:AES73487.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00385132286146667-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11592DICER1, DCR1 EC:3.1.26.- MicroRNAs in cancer map05206


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003676  nucleic acid binding

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0016891  endoribonuclease activity, producing 5'-phosphomonoesters


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000385s00019808.2PF00270.24DEAD442031.40E-13
Glyur000385s00019808.2PF00271.26Helicase_C3944512.90E-14
Glyur000385s00019808.2PF03368.9Dicer_dimer5236088.40E-25
Glyur000385s00019808.2PF02170.17PAZ8429781.80E-14
Glyur000385s00019808.2PF00636.21Ribonuclease_3102011541.10E-22
Glyur000385s00019808.2PF00636.21Ribonuclease_3123213403.60E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.807
SRR1783600control2.812
SRR1783602moderate drought stress4.133
SRR1811619moderate drought stress4.003

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.569
DRR006520Root Summer glycyrrhizin high producing strain6.442
DRR006521Root Winter glycyrrhizin high producing strain10.790
DRR006522Root Winter glycyrrhizin high producing strain10.397
DRR006523Root Summer glycyrrhizin low producing strain5.846
DRR006524Root Summer glycyrrhizin low producing strain5.814
DRR006525Leaf Summer glycyrrhizin high producing strain3.525
DRR006526Leaf Summer glycyrrhizin high producing strain3.563

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.738
SRR2868004Drought Stress(Tissue:root)14.462
SRR2967015Control (Tissue:root)15.600

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.978
SRR9715740Leave5.155
SRR9715741Leave4.268
SRR9715739Root0.997
SRR9715742Root5.066
SRR9715743Root5.017

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.050
SRR8749028MeJA induced 9h11.059
SRR8749029MeJA induced 9h3.693
SRR8749030Uninduced7.301
SRR8749031Uninduced4.848
SRR8749032Uninduced2.959

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.624
SRR8400027Control-Root9.742

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved