Gene detail information of Glyur000386s00015321.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72175.1 | 2.00E-51 | RING/U-box protein with domain of unknown function (DUF 1232) |
| NR | AFK34661.1 | 4.54E-99 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S319|I3S319_LOTJA | 2.00E-99 | Uncharacterized protein {ECO:0000313|EMBL:AFK34661.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00386 | 28414 | 30265 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000386s00015321.1 | PF06803.7 | DUF1232 | 139 | 174 | 1.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.718 |
| SRR1783600 | control | 43.353 |
| SRR1783602 | moderate drought stress | 45.243 |
| SRR1811619 | moderate drought stress | 45.736 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.639 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.482 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.337 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 24.305 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.171 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.587 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.863 |
| SRR2967015 | Control (Tissue:root) | 30.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.368 |
| SRR9715740 | Leave | 13.138 |
| SRR9715741 | Leave | 11.110 |
| SRR9715739 | Root | 22.730 |
| SRR9715742 | Root | 12.134 |
| SRR9715743 | Root | 10.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.911 |
| SRR8749028 | MeJA induced 9h | 31.347 |
| SRR8749029 | MeJA induced 9h | 43.588 |
| SRR8749030 | Uninduced | 30.577 |
| SRR8749031 | Uninduced | 18.320 |
| SRR8749032 | Uninduced | 27.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.113 |
| SRR8400027 | Control-Root | 27.374 |