Gene detail information of Glyur000386s00015331.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G25710.21.00E-123holocarboxylase synthase 1
NRXP_003601098.10Holocarboxylase synthetase hcs2 [Medicago truncatula]
COGYP_461988.13.00E-20biotin operon repressor / biotin--[acetyl-CoA-carboxylase] synthetase [Syntrophus aciditrophicus SB]
Swissprottr|Q9SL92|HCS1_ARATH2.00E-157Biotin--[acetyl-CoA-carboxylase] ligase (Precursor)
trEMBLtr|G7J3L5|G7J3L5_MEDTR0Biotin holocarboxylase synthetase, putative {ECO:0000313|EMBL:AES71349.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003868362889517-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01942HLCS EC:6.3.4.9 6.3.4.10 6.3.4.11 6.3.4.15 Biotin metabolism map00780


Gene Ontology

biological_process

GO:0006464  cellular protein modification process


molecular_function

GO:0004077  biotin-[acetyl-CoA-carboxylase] ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000386s00015331.2PF03099.14BPL_LplA_LipB1622684.10E-22
Glyur000386s00015331.2PF02237.12BPL_C3503983.50E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.712
SRR1783600control9.882
SRR1783602moderate drought stress16.397
SRR1811619moderate drought stress16.664

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.607
DRR006520Root Summer glycyrrhizin high producing strain12.549
DRR006521Root Winter glycyrrhizin high producing strain14.438
DRR006522Root Winter glycyrrhizin high producing strain13.633
DRR006523Root Summer glycyrrhizin low producing strain13.761
DRR006524Root Summer glycyrrhizin low producing strain13.813
DRR006525Leaf Summer glycyrrhizin high producing strain10.546
DRR006526Leaf Summer glycyrrhizin high producing strain10.356

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.156
SRR2868004Drought Stress(Tissue:root)42.999
SRR2967015Control (Tissue:root)41.754

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.629
SRR9715740Leave14.932
SRR9715741Leave13.087
SRR9715739Root4.672
SRR9715742Root8.863
SRR9715743Root8.779

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.941
SRR8749028MeJA induced 9h27.388
SRR8749029MeJA induced 9h20.722
SRR8749030Uninduced19.695
SRR8749031Uninduced21.561
SRR8749032Uninduced16.477

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.016
SRR8400027Control-Root19.556

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved