Gene detail

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Gene detail information of Glyur000386s00015334.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10120.2	0	Sucrose-phosphate synthase family protein
NR	XP_003526395.1	0	PREDICTED: probable sucrose-phosphate synthase 4-like isoform X1 [Glycine max]
COG	YP_003529338.1	5.00E-130	sucrose-phosphate synthase [Nitrosococcus halophilus Nc 4]
Swissprot	tr\|F4JLK2\|SPSA4_ARATH	0	Probable sucrose-phosphate synthase 4
trEMBL	tr\|I1KFX9\|I1KFX9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G48200.1}

Sequence

Transcript Sequence

>Glyur000386s00015334.1
ATGGCTGTGAACGAATGGCTAAATGGTTATTTGGAAGCAATATTGGACGTGGGAAGCAGCAGCATGAGATCAAAGCAGAGAAATGATGGCAAACTCAAAATGACAAAGTTTGAAAAATACAGAGATCATCAGAGAGAAGAGACTTTGTTTAATCCAACTAAGTACTTTGTTGAAGAAGTTGTCAATAGCTTTGATGAATCTGATCTTTACAGGACATGGGCTAAGGTAATAGCTACAAGGAATAATAGTCGTGAGCGTGGCAACAGGTTGGAGAATATGTGCTGGCGCATTTGGCATCTCACTCGCAAAAAGAAACAGCTCTCAGAAGGTGAAAAGGAAAAAGGGGATGCCAATGTTGTTTCTGAATTATGTGTCAAGGATAATAATAATATTTCTAGAATCAATTCTGAAATGCAGCTTTGTATTCATGGTTTGGTCCGAGGAGAAAATATGGAACTTGGGAGAGATTCTGACACAGGTGGCCAGGTCAAATATGTAGTGGAACTTGCTCGTGCTCTAGCCAATACNAAAGGAATATATCGTGTTGATCTATTGACTAGACAAATTGCTTCACCAGAAGTGGACTCCATCTATGGGGAGCCTATTGAGATGTACATACCAAAAGAATCACTTTGGCCTCACATACCNGAGTTTGTGGATGGTGCTCTAAACCACATTGTTAACATGGCAAGAGCCTTGGGGGAGCAAGTGAATGGGGGGAAGCCAACATGGCCTTATGTNATCCATGGTCACTATGCCGATGCCGGGGAGATAGCAGCTCACTTATCTGGTGCATTGAGTGTGCCTATGGTGCTAACAGGCCACTCATTAGGCCGGAACAAGTTTGAACAGTTGCTNAAGCAGGGAAGGCTCTCTAGGGAGGCCATAAATGCAACCTACAAGATCATGAGGAGGATTGAGGCTGAGGAGTTGNGTGTGGATGCTGCTGAAATGGTTGTCACTAGCACAAGGCAAGAGATTGAAGAGCAATGGGGACTGTATGATGGATTTGATCTCAAGNTGGAGAGGAAGCTTAGGGTCCGGAGAAGGCGCGGAGTCATTCCACCAGGCATGGATTTCAGCTATGTTAAAATGCGTGACTCAGTGGAAGGTGAAGGGGACCTCAAGTCCTTGATTGGATCTGATAGAGCTCAAAGAAAAAGGAACTTGCCTCCAATTTGGTCTGAGATAATGAGGTTTTTCACAAATCCTCACAAACCAATGATACTAGCCTTGTCCCGCCCTGACCCAAAGAAAAATGTCATGACTTTGCTCAAGGCTTTTGGAGAATGCCAGGCCCTAAGGGAGTTGGCTAACTTGACCCTTATACTTGGCAATAGAGATGACATTGAAGAAATGTCTGACAGTAGCTCTACTGTTCTTACCATGGTACTCATGCTCATTGACAAGTATGATTTGTATGGTCAAGTGGCTTATCCCAAGCATCATAAGCAATCTGAAGTTCCAGAAATATATCGTTTGGCTGCAAAATCTAAGGCAGCAGCTTATGGTTTACCTGTTGTTGCAACTAAAAATGGAGGGCCAGTGGATATCCTGAAGGCACTCAACAATGGACTCTTAATTGATCCACATGACCAGAAAGCCATAGCAGATTCACTAGTAAAGCTNGTTGCAGACAAAAATCTTTGGCTAGAATGCCGCAAGAAGGGCCTAAAAAACATCCATCGTTTTTCATGGCCTGAACACTGCCGCAACTACCTCTCCCACATTGAACACTGCAGGAACCGCCACTCCACCTCCCGCTTGGAAATTACACCAGTTGCTGAAGAACCAATAAGTGACTCATTAAGAGATGTAGAAGACCTTTCTTTTAGATTCTCCACAGAAGTAGATTCCAAATTGGATGGGGAGATGGACCTTGCTACGAGGCAAAAGGAAATTATCGAAGCAATTACTCGTAGGGTGTCCTCTACTGGCAATTCTAATGCCAGTTACTTTCCTGGTAGAAGGCAAAGGCTTGTTGTAATAGCAGCAGATTGTTATGATGGTGATGGAAATAGAACAGAAGCCTTACAGGCAATTATCAAGAATGTGATGAAAGGTGCAGGGCAAGGCATCAGTGCAGGCAGGGTGGGGCTAGTGTTGTTAACTGGTTCAAGTTTACAAGAGACAATTGAAGCATTGAACAGCTTCCAAGTAAACATAGAAGAATTTGATGCACTGGTTTGTAATACTGGAAGTGAAATGTATTATCCATGGAAAGATTTAATAGTTGATGCTGATTATGAAGCCCATGTTGAGTATGCATGGCCTGGTGAGAATATTAGATCAATGGTAACTAGGCTTNCTAGAATTGAAGATGGAGAGGAGGATGATATTGTAGAAGAGTATGCAAGTGCTTGCAGTTCTAGGTGCTACTCATATAGTGTGAAACCTGGAGCCATGATTCGAAAGATAGATGATCTTCGCCAAAGGCTAAGAATGAGGGGTTTCCGCTGCAATCTAGTCTATACACATGCAGGATTGAGATTGAATGTGATACCATTGTTTGCTTCAAGAAAACAAGCATTGAGGTATCTGTCAGTTAAGTGGGGAATTGATCTCTCCAAAGTAGTTGTATTTGTGGGAGAAAAAGGCGATACAGATTATGAAGAACTTGTGGCTGGTATCCAGAAGACTCTTGTTTTAAGAGGGGTTGTTGAAAATGGCAGTGAAAGGCTTCTTCGCAGTGAAGACAATTTCAAAAGAGAAGATGTGTTCTCCCAAGATAGTCCTAACATTATCTATGCAGAGAAGAGCTATGAGGACTGTGATATTCAACAATTCTAGAGCATCTCAAAGTATCATGATTAATATATTTGTTCACTATTTATATTTATAATATCATTACCCT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00386	92745	104659	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00696	E2.4.1.14	EC:2.4.1.14	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0009058 biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000386s00015334.1	PF13579.1	Glyco_trans_4_4	160	328	1.40E-07
Glyur000386s00015334.1	PF00534.15	Glycos_transf_1	500	557	1.70E-09
Glyur000386s00015334.1	PF05116.8	S6PP	695	869	2.60E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.663
SRR1783600	control	0.657
SRR1783602	moderate drought stress	1.027
SRR1811619	moderate drought stress	1.149

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.950
DRR006520	Root Summer glycyrrhizin high producing strain	0.999
DRR006521	Root Winter glycyrrhizin high producing strain	0.206
DRR006522	Root Winter glycyrrhizin high producing strain	0.166
DRR006523	Root Summer glycyrrhizin low producing strain	0.227
DRR006524	Root Summer glycyrrhizin low producing strain	0.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.251

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.062
SRR2868004	Drought Stress(Tissue:root)	1.373
SRR2967015	Control (Tissue:root)	1.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.412
SRR9715740	Leave	6.040
SRR9715741	Leave	3.175
SRR9715739	Root	0.097
SRR9715742	Root	1.625
SRR9715743	Root	1.084

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.075
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.021
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.012

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.246
SRR8400027	Control-Root	1.061