Gene detail

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Gene detail information of Glyur000386s00015338.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43280.1	2.00E-79	Far-red impaired responsive (FAR1) family protein
NR	XP_006582815.1	5.47E-144	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	9.00E-25	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|I1KFX4\|I1KFX4_SOYBN	2.00E-144	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G48170.4}

Sequence

Transcript Sequence

>Glyur000386s00015338.1
CACATTTTTAGGTCATTGAACTGACTGAACGAACTGGAAACTCCACACTCAAAAGGGGGCACACCCACTCTCTCTCACGCTCGCCTTTTGTTTCTGTGAAGCGGATCTATACAGCAAGGCTACATATTTTTTTTGTGGTTTGCTGATACCTTATTTTGTTATGCAATATGGAATCTCGATTAGTTGATGGGAGTGTCGGGATGGAAGTTTCTGGGGATGTTGGTTTGGATAGGTATGAAGTTCAGATACATCAAGAAACATATGATTATGAAGTGGATCCAAATGTGGGGTGTAGAGTGCTAGAGAGTTCTGGGGGAGAACTGGGTATCTCTGATGACCNTGCCATTCAGGAACCATATGAAGGCATGGAATTTGAATCTGAAGATGCTGCTAAGATATTCTANGATGAATATGCCCGACATGTAGGATTTGTCATGCGTGTGATGTCTTGTCGGCGCTCAGAAAGAGATGGTAGGATTCTTGCCCGCAGGCTTGGATGTAATAAGGAGGGTCATTGTGTCAGCATCCAAGGGAAATTTGGGTCAGTTCGTAAACCAAGGGCCAGCACAAGGGGAGGTTGTAAGGCGATGATTCATATCAAATATGANAAGTCTGAAAAATGGGTGATAACAAAGTTTGTAAAGGATCATAATCATCCATTAATAGTCTCTCCACGTGAAGCACGTCAATCAATGGATGAGAAGGATAAGAAAATTCAGGAATTAACATTAGAGCTTCGGAATAAAAAACGGTTGTGTGCAACNTATCAAGAACAGCTAGCTTCTTTTATGAAAATGGTTGAAGAGCAAAGTGATAAGCTGTCTGCTAGAATTCGNCACATAGTTAGTAATCTTAAAGAATTTGAATCCATAGAAGAGCTTTTGCACCAGAAGTAGCCCTGCATATTATATTCATGCAGATCGTGTCTTTCTCAGCAGTCTCGTGTTATGCACAATGCAGGCAGTGGTGTGATCACCAACTTGTACTAAAATGTTACTGAGTTATGTCATGTTCAAAGGATGGGGTCTTTGATCCTTCATAAATGAATGCAAAAGGATGCTGATTCAGTGATGAATACTTGGTAATGCTAGCTAGCCTTGTCACATAGAGATGGCCAATATATCTATAAATTNTGAAGTTGATAACTTGTCAAAATATATATATGCACTTTAAAAGCTAAAAGATGTATTGTGACATTTTGCCAGTGACAGAGATTAGATGCATTCCTTTACACCCCAAGTTGCGATGTAATCTTTGTATTAGTTTTTNCTTTTT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00386	122778	126914	+

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000386s00015338.1	PF03101.10	FAR1	78	165	5.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.723
SRR1783600	control	8.918
SRR1783602	moderate drought stress	11.071
SRR1811619	moderate drought stress	10.842

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.604
DRR006520	Root Summer glycyrrhizin high producing strain	16.508
DRR006521	Root Winter glycyrrhizin high producing strain	11.826
DRR006522	Root Winter glycyrrhizin high producing strain	11.656
DRR006523	Root Summer glycyrrhizin low producing strain	20.650
DRR006524	Root Summer glycyrrhizin low producing strain	21.170
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.784
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.771

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.869
SRR2868004	Drought Stress(Tissue:root)	14.182
SRR2967015	Control (Tissue:root)	13.673

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.691
SRR9715740	Leave	16.220
SRR9715741	Leave	9.291
SRR9715739	Root	1.486
SRR9715742	Root	4.213
SRR9715743	Root	4.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.012
SRR8749028	MeJA induced 9h	13.223
SRR8749029	MeJA induced 9h	11.264
SRR8749030	Uninduced	6.005
SRR8749031	Uninduced	2.850
SRR8749032	Uninduced	2.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.627
SRR8400027	Control-Root	16.296