Gene detail information of Glyur000387s00017685.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G58720.2 | 3.00E-37 | RING/U-box superfamily protein |
| NR | XP_004505456.1 | 4.69E-132 | PREDICTED: uncharacterized protein LOC101495900 [Cicer arietinum] |
| Swissprot | tr|Q9C7I1|ATL34_ARATH | 7.00E-12 | RING-H2 finger protein ATL34 (Precursor) |
| trEMBL | tr|G7JDV1|G7JDV1_MEDTR | 3.00E-125 | Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AES89846.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00387 | 18111 | 19981 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000387s00017685.1 | PF13639.1 | zf-RING_2 | 180 | 221 | 2.40E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.952 |
| SRR1783600 | control | 0.932 |
| SRR1783602 | moderate drought stress | 1.358 |
| SRR1811619 | moderate drought stress | 1.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.671 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.498 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.020 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.027 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.449 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.613 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.728 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.562 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.163 |
| SRR2967015 | Control (Tissue:root) | 4.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.894 |
| SRR9715740 | Leave | 5.005 |
| SRR9715741 | Leave | 3.665 |
| SRR9715739 | Root | 0.201 |
| SRR9715742 | Root | 1.188 |
| SRR9715743 | Root | 0.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.071 |
| SRR8749028 | MeJA induced 9h | 0.176 |
| SRR8749029 | MeJA induced 9h | 0.133 |
| SRR8749030 | Uninduced | 0.301 |
| SRR8749031 | Uninduced | 0.244 |
| SRR8749032 | Uninduced | 0.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.564 |
| SRR8400027 | Control-Root | 1.552 |