Gene detail information of Glyur000390s00023103.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15650.1 | 4.00E-146 | reversibly glycosylated polypeptide 2 |
| NR | XP_007151376.1 | 0 | hypothetical protein PHAVU_004G041600g [Phaseolus vulgaris] |
| COG | YP_003535748.1 | 1.00E-07 | hypothetical protein HVO_1704 [Haloferax volcanii DS2] |
| Swissprot | tr|Q8H8T0|RGP1_ORYSJ | 0 | UDP-arabinopyranose mutase 1 |
| trEMBL | tr|V7C245|V7C245_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW23370.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00390 | 63188 | 66397 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT75 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13379 | RGP, UTM | EC:2.4.1.- 5.4.99.30 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000390s00023103.1 | PF03214.8 | RGP | 13 | 140 | 2.50E-50 |
| Glyur000390s00023103.1 | PF03214.8 | RGP | 140 | 295 | 4.00E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.809 |
| SRR1783600 | control | 10.953 |
| SRR1783602 | moderate drought stress | 5.572 |
| SRR1811619 | moderate drought stress | 5.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.607 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.523 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.240 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.096 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.733 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 36.607 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.598 |
| SRR2967015 | Control (Tissue:root) | 14.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.077 |
| SRR9715740 | Leave | 1.330 |
| SRR9715741 | Leave | 0.406 |
| SRR9715739 | Root | 20.890 |
| SRR9715742 | Root | 4.935 |
| SRR9715743 | Root | 6.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.081 |
| SRR8749028 | MeJA induced 9h | 7.895 |
| SRR8749029 | MeJA induced 9h | 0.269 |
| SRR8749030 | Uninduced | 0.027 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.001 |
| SRR8400027 | Control-Root | 22.751 |