Gene detail information of Glyur000390s00023109.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02310.1 | 7.00E-85 | K-box region and MADS-box transcription factor family protein |
| NR | KEH25149.1 | 7.14E-133 | MADS-box transcription factor [Medicago truncatula] |
| Swissprot | tr|P29384|SEP2_ARATH | 3.00E-106 | Developmental protein SEPALLATA 2 |
| trEMBL | tr|A0A072U5X0|A0A072U5X0_MEDTR | 3.00E-133 | MADS-box transcription factor {ECO:0000313|EMBL:KEH25149.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00390 | 128627 | 140032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000390s00023109.1 | PF00319.13 | SRF-TF | 9 | 59 | 2.30E-29 |
| Glyur000390s00023109.1 | PF01486.12 | K-box | 82 | 165 | 2.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.183 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.104 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.154 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.055 |
| SRR9715740 | Leave | 0.079 |
| SRR9715741 | Leave | 0.090 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.219 |
| SRR8749028 | MeJA induced 9h | 6.623 |
| SRR8749029 | MeJA induced 9h | 0.857 |
| SRR8749030 | Uninduced | 1.610 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |