Gene detail information of Glyur000390s00023113.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | BAK32800.1 | 8.58E-10 | lysine/ornithine decarboxylase [Sophora flavescens] |
| Swissprot | tr|Q8S3N2|DCOR_CAPAN | 4.00E-08 | Ornithine decarboxylase |
| trEMBL | tr|F5HPS0|F5HPS0_SOPFL | 3.00E-10 | Lysine/ornithine decarboxylase {ECO:0000313|EMBL:BAK32800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00390 | 167196 | 176051 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01581 | E4.1.1.17, ODC1, speC, speF | EC:4.1.1.17 | Arginine and proline metabolism | map00330 |
| Glutathione metabolism | map00480 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.020 |
| SRR1783600 | control | 0.014 |
| SRR1783602 | moderate drought stress | 0.050 |
| SRR1811619 | moderate drought stress | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.867 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.185 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.049 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.144 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.300 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.007 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.008 |
| SRR2967015 | Control (Tissue:root) | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.005 |
| SRR9715740 | Leave | 0.010 |
| SRR9715741 | Leave | 0.039 |
| SRR9715739 | Root | 0.001 |
| SRR9715742 | Root | 0.010 |
| SRR9715743 | Root | 0.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.042 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.034 |
| SRR8749032 | Uninduced | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.145 |
| SRR8400027 | Control-Root | 0.067 |