Gene detail information of Glyur000391s00016043.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G08505.22.00E-129zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NRXP_004513288.10PREDICTED: zinc finger CCCH domain-containing protein 69-like isoform X1 [Cicer arietinum]
Swissprottr|E0X9N4|C3H69_ARATH5.00E-177Zinc finger CCCH domain-containing protein 69
trEMBLtr|G7IWL8|G7IWL8_MEDTR0Makorin RING-zinc-finger protein {ECO:0000313|EMBL:AES69377.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003911072816251-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000391s00016043.1PF00642.19zf-CCCH34541.70E-06
Glyur000391s00016043.1PF13639.1zf-RING_22032621.90E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.590
SRR1783600control13.489
SRR1783602moderate drought stress17.067
SRR1811619moderate drought stress16.243

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.727
DRR006520Root Summer glycyrrhizin high producing strain17.402
DRR006521Root Winter glycyrrhizin high producing strain42.555
DRR006522Root Winter glycyrrhizin high producing strain41.914
DRR006523Root Summer glycyrrhizin low producing strain19.136
DRR006524Root Summer glycyrrhizin low producing strain19.769
DRR006525Leaf Summer glycyrrhizin high producing strain25.128
DRR006526Leaf Summer glycyrrhizin high producing strain24.557

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.278
SRR2868004Drought Stress(Tissue:root)23.555
SRR2967015Control (Tissue:root)21.291

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.553
SRR9715740Leave39.753
SRR9715741Leave33.943
SRR9715739Root6.553
SRR9715742Root12.371
SRR9715743Root10.104

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.849
SRR8749028MeJA induced 9h16.846
SRR8749029MeJA induced 9h10.709
SRR8749030Uninduced12.560
SRR8749031Uninduced12.136
SRR8749032Uninduced8.892

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.526
SRR8400027Control-Root18.356

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved