Gene detail information of Glyur000391s00016045.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G08505.22.00E-85zinc finger (CCCH-type/C3HC4-type RING finger) family protein
NRKHN07702.10Zinc finger CCCH domain-containing protein 69 [Glycine soja]
Swissprottr|E0X9N4|C3H69_ARATH9.00E-104Zinc finger CCCH domain-containing protein 69
trEMBLtr|I1MJM7|I1MJM7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G42820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003912456428088-


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000391s00016045.1PF00642.19zf-CCCH35566.80E-06
Glyur000391s00016045.1PF13639.1zf-RING_21942561.60E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.135
SRR1783600control42.148
SRR1783602moderate drought stress43.079
SRR1811619moderate drought stress43.069

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.570
DRR006520Root Summer glycyrrhizin high producing strain42.091
DRR006521Root Winter glycyrrhizin high producing strain52.195
DRR006522Root Winter glycyrrhizin high producing strain50.812
DRR006523Root Summer glycyrrhizin low producing strain36.309
DRR006524Root Summer glycyrrhizin low producing strain35.911
DRR006525Leaf Summer glycyrrhizin high producing strain21.705
DRR006526Leaf Summer glycyrrhizin high producing strain21.904

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.801
SRR2868004Drought Stress(Tissue:root)52.092
SRR2967015Control (Tissue:root)46.830

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.377
SRR9715740Leave28.580
SRR9715741Leave24.206
SRR9715739Root34.972
SRR9715742Root34.963
SRR9715743Root37.401

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.863
SRR8749028MeJA induced 9h66.129
SRR8749029MeJA induced 9h61.635
SRR8749030Uninduced28.744
SRR8749031Uninduced26.643
SRR8749032Uninduced46.286

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.687
SRR8400027Control-Root47.418

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved