Gene detail information of Glyur000391s00016047.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G57670.1 | 1.00E-88 | C2H2-type zinc finger family protein |
| NR | XP_003531439.1 | 4.30E-166 | PREDICTED: protein TRANSPARENT TESTA 1-like [Glycine max] |
| Swissprot | tr|Q9SVY1|ZWIP2_ARATH | 1.00E-109 | Zinc finger protein WIP2 |
| trEMBL | tr|I1KTM1|I1KTM1_SOYBN | 2.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G16390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 32575 | 34980 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016047.1 | PF13894.1 | zf-C2H2_4 | 188 | 207 | 0.00036 |
| Glyur000391s00016047.1 | PF13894.1 | zf-C2H2_4 | 274 | 295 | 0.59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.986 |
| SRR1783600 | control | 9.094 |
| SRR1783602 | moderate drought stress | 10.406 |
| SRR1811619 | moderate drought stress | 10.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.324 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.312 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.356 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.009 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.412 |
| SRR2967015 | Control (Tissue:root) | 0.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.867 |
| SRR9715740 | Leave | 3.397 |
| SRR9715741 | Leave | 2.528 |
| SRR9715739 | Root | 1.884 |
| SRR9715742 | Root | 5.769 |
| SRR9715743 | Root | 4.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.276 |
| SRR8749028 | MeJA induced 9h | 1.137 |
| SRR8749029 | MeJA induced 9h | 1.841 |
| SRR8749030 | Uninduced | 0.277 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.392 |
| SRR8400027 | Control-Root | 3.233 |