Gene detail information of Glyur000391s00016078.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11940.1 | 3.00E-36 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | KEH36919.1 | 3.32E-66 | core-2/I-branching enzyme [Medicago truncatula] |
| Swissprot | tr|Q8LDF9|HMGB7_ARATH | 6.00E-17 | High mobility group B protein 7 |
| trEMBL | tr|A0A072V4K7|A0A072V4K7_MEDTR | 1.00E-66 | Core-2/I-branching enzyme {ECO:0000313|EMBL:KEH36919.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00391 | 164883 | 169267 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000391s00016078.1 | PF02485.16 | Branch | 45 | 185 | 1.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.189 |
| SRR1783600 | control | 2.686 |
| SRR1783602 | moderate drought stress | 21.375 |
| SRR1811619 | moderate drought stress | 22.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.422 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.551 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.746 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.727 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.420 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.134 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.335 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.465 |
| SRR2967015 | Control (Tissue:root) | 1.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.146 |
| SRR9715742 | Root | 1.282 |
| SRR9715743 | Root | 1.189 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.203 |
| SRR8749028 | MeJA induced 9h | 5.372 |
| SRR8749029 | MeJA induced 9h | 0.227 |
| SRR8749030 | Uninduced | 0.695 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.427 |
| SRR8400027 | Control-Root | 4.010 |