Gene detail information of Glyur000392s00023199.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05160.1 | 2.00E-147 | AMP-dependent synthetase and ligase family protein |
| NR | XP_006591122.1 | 0 | PREDICTED: 4-coumarate--CoA ligase-like 7-like isoform X2 [Glycine max] |
| COG | YP_003291469.1 | 3.00E-81 | AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252] |
| Swissprot | tr|Q9M0X9|4CLL7_ARATH | 0 | 4-coumarate--CoA ligase-like 7 |
| trEMBL | tr|I1LL16|I1LL16_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G20020.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 104043 | 109271 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000392s00023199.1 | PF00501.23 | AMP-binding | 59 | 139 | 8.60E-15 |
| Glyur000392s00023199.1 | PF00501.23 | AMP-binding | 166 | 414 | 7.90E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.005 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.411 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.007 |
| SRR9715740 | Leave | 1.373 |
| SRR9715741 | Leave | 1.342 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.050 |
| SRR9715743 | Root | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.033 |
| SRR8400027 | Control-Root | 0.146 |