Gene detail information of Glyur000392s00023202.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05160.1 | 3.00E-48 | AMP-dependent synthetase and ligase family protein |
| NR | KHN38721.1 | 1.60E-63 | 4-coumarate--CoA ligase-like 7 [Glycine soja] |
| COG | YP_001869555.1 | 6.00E-35 | thioester reductase domain-containing protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9M0X9|4CLL7_ARATH | 1.00E-56 | 4-coumarate--CoA ligase-like 7 |
| trEMBL | tr|V7AFE5|V7AFE5_PHAVU | 1.00E-63 | Uncharacterized protein {ECO:0000313|EMBL:ESW04307.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 130374 | 132708 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01904 | 4CL | EC:6.2.1.12 | Phenylalanine metabolism | map00360 |
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000392s00023202.1 | PF00501.23 | AMP-binding | 3 | 81 | 2.20E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.233 |
| SRR1811619 | moderate drought stress | 0.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.295 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.918 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.058 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.869 |
| SRR2967015 | Control (Tissue:root) | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.061 |
| SRR9715740 | Leave | 3.907 |
| SRR9715741 | Leave | 5.622 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.552 |
| SRR9715743 | Root | 0.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.272 |
| SRR8400027 | Control-Root | 0.327 |