Gene detail information of Glyur000392s00023203.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58410.1 | 0 | HEAT/U-box domain-containing protein |
| NR | XP_004490684.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase listerin-like [Cicer arietinum] |
| Swissprot | tr|Q9FGI1|LTN1_ARATH | 0 | E3 ubiquitin-protein ligase listerin |
| trEMBL | tr|K7KAA3|K7KAA3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39905.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00392 | 142701 | 155942 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000392s00023203.1 | PF13639.1 | zf-RING_2 | 1714 | 1762 | 4.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.645 |
| SRR1783600 | control | 7.656 |
| SRR1783602 | moderate drought stress | 8.301 |
| SRR1811619 | moderate drought stress | 8.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.998 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.959 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.364 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.050 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.309 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.360 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.783 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.025 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.727 |
| SRR2967015 | Control (Tissue:root) | 11.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.211 |
| SRR9715740 | Leave | 7.138 |
| SRR9715741 | Leave | 7.901 |
| SRR9715739 | Root | 2.876 |
| SRR9715742 | Root | 12.143 |
| SRR9715743 | Root | 10.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.780 |
| SRR8749028 | MeJA induced 9h | 9.143 |
| SRR8749029 | MeJA induced 9h | 7.592 |
| SRR8749030 | Uninduced | 8.512 |
| SRR8749031 | Uninduced | 10.373 |
| SRR8749032 | Uninduced | 7.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.304 |
| SRR8400027 | Control-Root | 12.354 |