Gene detail information of Glyur000396s00032779.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54520.1 | 3.00E-140 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004510012.1 | 0 | PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum] |
| COG | YP_001658758.1 | 5.00E-20 | WD repeat-containing protein [Microcystis aeruginosa NIES-843] |
| Swissprot | tr|Q94BR4|PR19A_ARATH | 4.00E-09 | Pre-mRNA-processing factor 19 homolog 1 {ECO:0000305} |
| trEMBL | tr|K7N3E5|K7N3E5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G27821.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00396 | 141450 | 156135 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000396s00032779.1 | PF00400.27 | WD40 | 124 | 161 | 2.00E-07 |
| Glyur000396s00032779.1 | PF00400.27 | WD40 | 173 | 205 | 6.20E-06 |
| Glyur000396s00032779.1 | PF00400.27 | WD40 | 221 | 247 | 0.0011 |
| Glyur000396s00032779.1 | PF00400.27 | WD40 | 364 | 386 | 0.002 |
| Glyur000396s00032779.1 | PF00400.27 | WD40 | 392 | 423 | 0.028 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.765 |
| SRR1783600 | control | 10.918 |
| SRR1783602 | moderate drought stress | 14.288 |
| SRR1811619 | moderate drought stress | 14.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.862 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.006 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.783 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.829 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.011 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.280 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.854 |
| SRR2967015 | Control (Tissue:root) | 15.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.254 |
| SRR9715740 | Leave | 8.129 |
| SRR9715741 | Leave | 11.186 |
| SRR9715739 | Root | 3.129 |
| SRR9715742 | Root | 7.482 |
| SRR9715743 | Root | 6.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.502 |
| SRR8749028 | MeJA induced 9h | 12.723 |
| SRR8749029 | MeJA induced 9h | 13.248 |
| SRR8749030 | Uninduced | 7.753 |
| SRR8749031 | Uninduced | 9.811 |
| SRR8749032 | Uninduced | 7.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.923 |
| SRR8400027 | Control-Root | 15.298 |