Gene detail information of Glyur000396s00032779.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G54520.13.00E-140Transducin/WD40 repeat-like superfamily protein
NRXP_004510012.10PREDICTED: WD repeat-containing protein 25-like [Cicer arietinum]
COGYP_001658758.15.00E-20WD repeat-containing protein [Microcystis aeruginosa NIES-843]
Swissprottr|Q94BR4|PR19A_ARATH4.00E-09Pre-mRNA-processing factor 19 homolog 1 {ECO:0000305}
trEMBLtr|K7N3E5|K7N3E5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G27821.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00396141450156135+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000396s00032779.2PF00400.27WD401241570.13
Glyur000396s00032779.2PF00400.27WD401982200.0011
Glyur000396s00032779.2PF00400.27WD402262570.015


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.765
SRR1783600control10.918
SRR1783602moderate drought stress14.288
SRR1811619moderate drought stress14.244

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.862
DRR006520Root Summer glycyrrhizin high producing strain10.006
DRR006521Root Winter glycyrrhizin high producing strain28.783
DRR006522Root Winter glycyrrhizin high producing strain28.018
DRR006523Root Summer glycyrrhizin low producing strain12.829
DRR006524Root Summer glycyrrhizin low producing strain13.011
DRR006525Leaf Summer glycyrrhizin high producing strain6.714
DRR006526Leaf Summer glycyrrhizin high producing strain6.690

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.280
SRR2868004Drought Stress(Tissue:root)15.854
SRR2967015Control (Tissue:root)15.165

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.254
SRR9715740Leave8.129
SRR9715741Leave11.186
SRR9715739Root3.129
SRR9715742Root7.482
SRR9715743Root6.122

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.502
SRR8749028MeJA induced 9h12.723
SRR8749029MeJA induced 9h13.248
SRR8749030Uninduced7.753
SRR8749031Uninduced9.811
SRR8749032Uninduced7.433

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.923
SRR8400027Control-Root15.298

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved