Gene detail information of Glyur000397s00020470.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42490.10Copper amine oxidase family protein
NRXP_004489782.10PREDICTED: copper methylamine oxidase-like [Cicer arietinum]
COGYP_007125935.10Copper amine oxidase domain-containing protein [Gloeocapsa sp. PCC 7428]
Swissprottr|Q43077|AMO_PEA8.00E-62Primary amine oxidase (Precursor)
trEMBLtr|A0A059CYN9|A0A059CYN9_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW83296.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003977355688619+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00276AOC3, AOC2, tynA EC:1.4.3.21 Glycine, serine and threonine metabolism map00260
Tyrosine metabolismmap00350
Phenylalanine metabolismmap00360
beta-Alanine metabolismmap00410
Isoquinoline alkaloid biosynthesismap00950
Tropane, piperidine and pyridine alkaloid biosynthesismap00960


Gene Ontology

biological_process

GO:0009308  amine metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005488  binding

GO:0005507  copper ion binding

GO:0005515  protein binding

GO:0008131  primary amine oxidase activity

GO:0048038  quinone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000397s00020470.2PF02728.11Cu_amine_oxidN31782829.10E-33
Glyur000397s00020470.2PF01179.15Cu_amine_oxid3064581.20E-61
Glyur000397s00020470.2PF01179.15Cu_amine_oxid4597012.60E-78
Glyur000397s00020470.2PF00514.18Arm9599997.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control19.654
SRR1783600control19.694
SRR1783602moderate drought stress8.728
SRR1811619moderate drought stress8.733

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.042
DRR006520Root Summer glycyrrhizin high producing strain9.953
DRR006521Root Winter glycyrrhizin high producing strain6.716
DRR006522Root Winter glycyrrhizin high producing strain6.471
DRR006523Root Summer glycyrrhizin low producing strain5.579
DRR006524Root Summer glycyrrhizin low producing strain5.778
DRR006525Leaf Summer glycyrrhizin high producing strain6.874
DRR006526Leaf Summer glycyrrhizin high producing strain6.898

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)40.086
SRR2868004Drought Stress(Tissue:root)36.296
SRR2967015Control (Tissue:root)28.211

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.332
SRR9715740Leave9.386
SRR9715741Leave9.019
SRR9715739Root9.557
SRR9715742Root15.390
SRR9715743Root14.008

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.416
SRR8749028MeJA induced 9h6.960
SRR8749029MeJA induced 9h5.428
SRR8749030Uninduced4.406
SRR8749031Uninduced2.818
SRR8749032Uninduced3.788

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.763
SRR8400027Control-Root26.235

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved