Gene detail information of Glyur000397s00020477.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70580.40alanine-2-oxoglutarate aminotransferase 2
NRXP_003613139.10Alanine aminotransferase [Medicago truncatula]
COGYP_006528272.12.00E-44aminotransferase [Melioribacter roseus P3M-2]
Swissprottr|Q9S7E9|GGT2_ARATH0Glutamate--glyoxylate aminotransferase 2
trEMBLtr|G7JYY7|G7JYY7_MEDTR0Glutamate-glyoxylate aminotransferase {ECO:0000313|EMBL:AES96097.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00397112440119612-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14272GGAT EC:2.6.1.4 2.6.1.2 2.6.1.44 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Alanine, aspartate and glutamate metabolismmap00250
Glycine, serine and threonine metabolismmap00260
Arginine biosynthesismap00220


Gene Ontology

biological_process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000397s00020477.1PF00155.16Aminotran_1_2854416.00E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.484
SRR1783600control34.484
SRR1783602moderate drought stress44.457
SRR1811619moderate drought stress44.523

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain60.872
DRR006520Root Summer glycyrrhizin high producing strain61.218
DRR006521Root Winter glycyrrhizin high producing strain65.745
DRR006522Root Winter glycyrrhizin high producing strain63.718
DRR006523Root Summer glycyrrhizin low producing strain61.338
DRR006524Root Summer glycyrrhizin low producing strain59.842
DRR006525Leaf Summer glycyrrhizin high producing strain878.959
DRR006526Leaf Summer glycyrrhizin high producing strain870.920

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)102.853
SRR2868004Drought Stress(Tissue:root)127.634
SRR2967015Control (Tissue:root)101.332

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave845.697
SRR9715740Leave1003.386
SRR9715741Leave740.482
SRR9715739Root31.682
SRR9715742Root45.309
SRR9715743Root45.597

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h152.020
SRR8749028MeJA induced 9h116.912
SRR8749029MeJA induced 9h105.884
SRR8749030Uninduced75.987
SRR8749031Uninduced105.683
SRR8749032Uninduced71.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.709
SRR8400027Control-Root59.666

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved