Gene detail information of Glyur000397s00020478.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.10Chalcone and stilbene synthase family protein
NRACH67480.10chalcone synthase [Glycyrrhiza inflata]
COGYP_004010555.14.00E-43Naringenin-chalcone synthase [Rhodomicrobium vannielii ATCC 17100]
Swissprottr|P51088|CHS6_TRISU0Chalcone synthase 6
trEMBLtr|C4MJ52|C4MJ52_9FABA0Chalcone synthase {ECO:0000313|EMBL:ACH67480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00397122632124473+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000397s00020478.1PF00195.14Chal_sti_synt_N32283.00E-127
Glyur000397s00020478.1PF02797.10Chal_sti_synt_C2383875.90E-77


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control116.771
SRR1783600control118.211
SRR1783602moderate drought stress41.607
SRR1811619moderate drought stress43.300

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.263
DRR006522Root Winter glycyrrhizin high producing strain0.155
DRR006523Root Summer glycyrrhizin low producing strain0.367
DRR006524Root Summer glycyrrhizin low producing strain0.289
DRR006525Leaf Summer glycyrrhizin high producing strain71.221
DRR006526Leaf Summer glycyrrhizin high producing strain72.223

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)64.731
SRR2868004Drought Stress(Tissue:root)211.376
SRR2967015Control (Tissue:root)130.648

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave91.279
SRR9715740Leave7.587
SRR9715741Leave73.163
SRR9715739Root96.444
SRR9715742Root35.495
SRR9715743Root48.981

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h432.078
SRR8749028MeJA induced 9h572.152
SRR8749029MeJA induced 9h250.553
SRR8749030Uninduced1365.192
SRR8749031Uninduced1528.789
SRR8749032Uninduced735.306

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root96.723
SRR8400027Control-Root54.213

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved