Gene detail

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Gene detail information of Glyur000397s00020482.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51940.1	3.00E-100	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	AES96123.2	0	LysM type receptor kinase [Medicago truncatula]
COG	YP_002763346.1	9.00E-25	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
Swissprot	tr\|F4IB81\|LYK3_ARATH	6.00E-116	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|G7JZ13\|G7JZ13_MEDTR	0	LysM type receptor kinase {ECO:0000313\|EMBL:AES96123.2}

Sequence

Transcript Sequence

>Glyur000397s00020482.1
ATGGCTTCTTCTCTGGCTCTAATCCTCCCTCTATTAGCAACTTCAATATTGGCAAGTGTGTTTTCCTTGGAAGTTTCAATGAAAATAACTTACCTGGAACCTTTCAAGTGCTCTTCAAAGATTAGGACATGCAATGCCTCACTCTACCACATAAGCCACGATCTCACTATAGAANAAATATCCCATTTTTACTCTGTTAATTCCTCCCAAGTCAAACCCATAATGCGTGGCACCAAACTAGATTACCTCATAACAGTGCCTTGTTCTTGCAAAAACACCATTGAACTTAGCGGGTATTTCTATGACACAACCTACAAGGTGAGGGCCAATGACACCTTTGTGGATATTCAGAATCTGGTTTATAGTGGGCAGGCCTGGCCTGTTGATAAAGAAGATTTGGTCCCAGATGAGGATATAGCAATACATATTCCTTGTGGGTGTTCTGAAAGTGACTCACAAATTGTTGTCACATATACAGTCGAGAGGAATGATACACCAACATCAATTGCTCATCTGCTTAATGCTACTTTTGATGGCATGGTGAGAATGAACCAAGTTATGGCTCCTAACCCCTCATTCATAGATATTGAAAAGAAGCACATGTGGGTGACCATTGTTGGTATCTTAGTGGGGGTGACATTACTTTCAATTATTACTGTGATCATTCTCATTCTTAGGAGAAACAGAGCCTATGAAACCAGTAAAGATGATCCAAATGCTGTCTCCAAAAGATCAATTGCCAATAGAACTGCTTCCTTGAGGAATCGCGACTTTCATAAAGAATATATGGAAGATGCAACGCAATTCGATTCAGAAAGACCGGTAATTTATACTCTTGAGGAGGTTGAACATGCTACAAATGACTTTGATGAAACTCGAAGGATTGGAGTTGGTGGATATGGGACTGTGTATTTTGGAATGTTAGAGGATAAGGAGGTTGCTGTGAAGAAGATGAGGTCTAACAAGTCCAAAGAATTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATCAACATTGTGGAGTTGTTGGGATATGCCAGTGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTCAGTGAACATCTTCATGATCCACTACTGAAAGGTAACCAGCCTCTTTCTTGGTGTGCTAGGACTCAAATTGCACTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACGAAAGCGCGATATGTGCACCGTGATGTAAAAACAAGTAATATTCTTCTAGATGAGAAGCTCAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACCATAAAAACTGATGTATTTGCATTTGGAGTGGTTCTGTCAGAGTTGATAACAGGGAAACGTGCACTATTTCGTGACAACCAAGAGGCCACCAATACTAAATCACTTATTGCAGTTGTTAACAAAATATTCCAAGATGATGATCCAGAGACTGCTTTAGAAGATGCTATAGATGGGAATCTTCAACGTAGCTATCCTATGGAAGATGTCTACAAGATGGGAGAACTATCTCATTGGTGCTTGAGCGAAAATCCAGTGGACAGACCTGAAATGAAGGAGCTCGTTGTGGCATTATCAAAGATTGTAATGTCCTCNATAGAATGGGAAGCTTCACTAGGTGGGGACAGCCAGGTCTTTAGCGGGGTATTTGATGGAAGATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00397	140982	145840	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000397s00020482.1	PF00069.20	Pkinase	291	562	3.70E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.394
SRR1783600	control	0.321
SRR1783602	moderate drought stress	0.159
SRR1811619	moderate drought stress	0.170

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.121
DRR006520	Root Summer glycyrrhizin high producing strain	0.080
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.207
DRR006524	Root Summer glycyrrhizin low producing strain	0.185
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.434
SRR2868004	Drought Stress(Tissue:root)	12.449
SRR2967015	Control (Tissue:root)	4.484

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.001
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.056
SRR9715742	Root	0.034
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.003
SRR8749028	MeJA induced 9h	0.034
SRR8749029	MeJA induced 9h	0.022
SRR8749030	Uninduced	0.142
SRR8749031	Uninduced	0.111
SRR8749032	Uninduced	0.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.749
SRR8400027	Control-Root	0.893