Gene detail

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Gene detail information of Glyur000398s00034452.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06060.1	6.00E-107	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004503163.1	1.13E-168	PREDICTED: tropinone reductase homolog [Cicer arietinum]
COG	YP_004658067.1	2.00E-86	Tropinone reductase I [Runella slithyformis DSM 19594]
Swissprot	tr\|P50165\|TRNH_DATST	5.00E-112	Tropinone reductase homolog
trEMBL	tr\|A0A072UYU2\|A0A072UYU2_MEDTR	1.00E-166	NAD(P)-binding rossmann-fold protein {ECO:0000313\|EMBL:KEH34737.1}

Sequence

Transcript Sequence

>Glyur000398s00034452.1
CACACAACACTAGCAGATATTTTCAATCAAATTGACCAAACAAGGGACGAACAACAGCAAAAACAGTGTGACAGTCACAGAAACAGCAATGGCGAACCAAGAGAGCAGTAGCGATAACAGAGGCTCAAGATGGTCCCTCAAAGGGACCACCGCTCTAGTTACTGGCGGAACGCGTGGAATCGGGNACGCTGTGGTGGAGGAACTGGCGGAGTTTGGTGCCACAGTGTACACTTGTTCAAGGAACGAAGATGAGCTTAACAGATGCTTAAAGGAGTGGCAAGATAAGGGGTTTTCTGTTCATGGGTCTGTCTGTGATGCGTCTTCTCCACCCCAGAGAGATGAGCTTATTCGAAATGTTGCTTCTGCCTTCAATGGCAAGCTCAACATACTTGTAAACAATGTTGGAACAAATATGAGGAAGCCAACAATTGAGTATACAACAGAAGAATATTCAAAATTGATGACTACTAATTTGGACTCTGCATACCATCTATGCCAACTTGCGTATTCTCTTCTTAAAGCATCTGGAAATGGAAGCATTGTGTTCATTTCCTCTGTTGCATCTCTGACAAGCGTAGGTTCTGGAACCGTTTATGCAGCGAGTAAAGCTGCAATCAATCAGATGGCCAAATATCTTGCTTGTGAATGGGCAAAAGACAATATTAGGAGCAACTGTGTTGCACCCTGGTATACTAAAACACCGCTTGTGGAAAATTTAATTTCTAACAAAGAGTTTGTGAATGAGATAATATCACGAACACCGATAAAGAGGATAGCAGAAGCACATGAAGTGTCATCGTTGGTGACTTTCCTTTGCCTGCCAGCAGCTTCCTACATCACTGGNCAGGTTATCTCTGTTGATGGAGGATTTACTGTGAATGGATTTCAACCCAGCATGAGGATTAACTAAAGCAACATTGTCATCATTATTTTCTGGATTGTGTACAACACAAAAGGTATTCATCAAGTTGTGGTTACAGGGTCTGGCTTTCAGTTTGTCATGAATAATTTTGTTTGTGGATTGGTATTTTCCTGAGCAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00398	29562	32143	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08081	TR1	EC:1.1.1.206	Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000398s00034452.1	PF13561.1	adh_short_C2	29	262	2.90E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.691
SRR1783600	control	16.013
SRR1783602	moderate drought stress	19.778
SRR1811619	moderate drought stress	19.168

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.722
DRR006520	Root Summer glycyrrhizin high producing strain	23.476
DRR006521	Root Winter glycyrrhizin high producing strain	31.889
DRR006522	Root Winter glycyrrhizin high producing strain	30.714
DRR006523	Root Summer glycyrrhizin low producing strain	22.920
DRR006524	Root Summer glycyrrhizin low producing strain	22.549
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.271

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	17.542
SRR2868004	Drought Stress(Tissue:root)	16.435
SRR2967015	Control (Tissue:root)	26.353

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	34.201
SRR9715740	Leave	41.626
SRR9715741	Leave	34.076
SRR9715739	Root	2.078
SRR9715742	Root	7.704
SRR9715743	Root	7.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.818
SRR8749028	MeJA induced 9h	39.001
SRR8749029	MeJA induced 9h	25.015
SRR8749030	Uninduced	15.367
SRR8749031	Uninduced	5.542
SRR8749032	Uninduced	8.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	23.486
SRR8400027	Control-Root	24.617