Gene detail information of Glyur000398s00034457.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11420.1 | 3.00E-143 | Protein of unknown function (DUF604) |
| NR | XP_007163444.1 | 0 | hypothetical protein PHAVU_001G235100g [Phaseolus vulgaris] |
| trEMBL | tr|V7D191|V7D191_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW35438.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00398 | 120289 | 126073 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT31 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000398s00034457.1 | PF04646.7 | DUF604 | 242 | 481 | 2.50E-92 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.055 |
| SRR1783600 | control | 43.781 |
| SRR1783602 | moderate drought stress | 56.696 |
| SRR1811619 | moderate drought stress | 56.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 81.549 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 80.847 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 204.343 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 199.891 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 64.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.424 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.925 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 57.802 |
| SRR2868004 | Drought Stress(Tissue:root) | 57.280 |
| SRR2967015 | Control (Tissue:root) | 52.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.228 |
| SRR9715740 | Leave | 12.003 |
| SRR9715741 | Leave | 15.381 |
| SRR9715739 | Root | 21.096 |
| SRR9715742 | Root | 42.625 |
| SRR9715743 | Root | 39.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.490 |
| SRR8749028 | MeJA induced 9h | 3.792 |
| SRR8749029 | MeJA induced 9h | 2.275 |
| SRR8749030 | Uninduced | 1.612 |
| SRR8749031 | Uninduced | 0.621 |
| SRR8749032 | Uninduced | 2.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 91.233 |
| SRR8400027 | Control-Root | 60.624 |