Gene detail

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Gene detail information of Glyur000399s00017816.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19950.1	2.00E-69	RING/U-box superfamily protein
NR	XP_004515274.1	2.79E-138	PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|P0CH30\|RING1_GOSHI	1.00E-96	E3 ubiquitin-protein ligase RING1
trEMBL	tr\|V7C314\|V7C314_PHAVU	4.00E-136	Uncharacterized protein {ECO:0000313\|EMBL:ESW24544.1}

Sequence

Transcript Sequence

>Glyur000399s00017816.1
ATGTCTTCTGCCGGCGGCACCGACGGCGGTGGCGGCGCAATCTCCGGCGAGTCTCGCCAATACTTCTGCCACCAGTGCGAGCGCACCGTCTCGATTTCCCCTTCCCCCGGCGATCTCGTTTGCCCCANTTGCAACGGCGGCTTCCTCGAGGAAGTCGAAAACCCAATCCCTAACCCTAACCCTTTCCCTCCTCATCCCTTCTTCTCCTTCGCCAGCGATTTCCCCGGCGCCGGATCTTCCTTCCCCCTCGTAATCTCCGGCGGCGCCTCTCAACAACAACAACAACCATTCGACGATCTCTCCGCTTTATTCGGCAACCGATCTTCGCCGTCGCCATTCGGCGGCGCCGAACCGTTCAACCCCTTCGCCTTCGTTCAGAACTATGTCCAGACCCTAAGAGCCGGTGGCGCCAACGTTCAATTCGTGATCGAGAACGCCGGCGACNCTACCGGAGCTTTCCGGATGCCCGGCAACGTGAATCCCGGCGATTACTTCTTCGGTCCGGGACTTGAGGAGCTGATCCAGCAGCTCGCGGAGAACGATCCGAATCGCCGTGGGACTCCACCGGCATCGAAGTCCGCCGTGGAAGGGCTGCCNGATATATCGGTCACGGAGGAGCTGCTGGCTTCCGATTCCTCGCAGTGTGCGGTGTGCAAAGACACATTTGCCCTCGGCGAGAAGGCGAAGCAGATGCCGTGTAAGCATATCTATCATTCCGATTGCATCTTGCCNTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGGTATGAGTTGCCGACCGACGATCCAGACTACGAGCAGAGGGCTGGACATGGTGGCGAAGGCGGTGGCGATGGTTCGGGCGATTCTTCTGGTGGCGGTGGTGGAGATAATTCACAGAGGAGGAGGTTTAGGGTGTCTTTGCCTTGGCCCTTTAGGCAGTTTTCTTCTTCTGTTGCTGAGACAAGTAATAATGTGAATGTCAACAACAACAACAACAACAACAACAATAGCAATAGCAATAGTGGAAATAATAGTGGGCAATCGAATGCTGAAAGTAGGGGGAATCGGAATTTTGATTCGGAGACCAGACAAGAAGATCTCGATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	48214	49305	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017816.1	PF14369.1	zf-RING_3	20	51	1.10E-14
Glyur000399s00017816.1	PF13639.1	zf-RING_2	214	256	8.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	47.433
SRR1783600	control	48.425
SRR1783602	moderate drought stress	41.254
SRR1811619	moderate drought stress	41.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	55.824
DRR006520	Root Summer glycyrrhizin high producing strain	55.668
DRR006521	Root Winter glycyrrhizin high producing strain	37.382
DRR006522	Root Winter glycyrrhizin high producing strain	36.072
DRR006523	Root Summer glycyrrhizin low producing strain	37.853
DRR006524	Root Summer glycyrrhizin low producing strain	38.985
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.338
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.282

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	40.040
SRR2868004	Drought Stress(Tissue:root)	40.057
SRR2967015	Control (Tissue:root)	42.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	36.404
SRR9715740	Leave	36.531
SRR9715741	Leave	39.454
SRR9715739	Root	38.072
SRR9715742	Root	39.761
SRR9715743	Root	41.527

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.259
SRR8749028	MeJA induced 9h	21.527
SRR8749029	MeJA induced 9h	24.111
SRR8749030	Uninduced	16.571
SRR8749031	Uninduced	19.340
SRR8749032	Uninduced	18.762

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	43.580
SRR8400027	Control-Root	39.754