Gene detail

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Gene detail information of Glyur000399s00017818.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34130.1	0	staurosporin and temperature sensitive 3-like b
NR	XP_002269119.2	0	PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Vitis vinifera]
COG	YP_008797149.1	9.00E-72	conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum]
Swissprot	tr\|Q9FX21\|STT3B_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
trEMBL	tr\|F6HVR5\|F6HVR5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58778.1}

Sequence

Transcript Sequence

>Glyur000399s00017818.1
GGTATATCTGGGTGGGAGTGAAGAGTGATGTAATTAAGCTTGAAAAAANGTGTGTTTGGATTCTGTAATATCCGGATCCCATCCCTGCCCGGAATTGGAACACGTTGGATTCATCCTTCATTCCATTCCCATTCCATCATTGACTTTTGACTCTTCTTCTTTCTCACACTCAGATCCACACTCTCAAACACAGTAACCATTTTTCCCGAGAAAATCAAAATCCTCCAAATTTTCCATGAAAATCCNCTCCTCGCCCTACAGATAGAAAGATCCTTCTGTTTCCACCACCGATGGTCGTTGCCACCTCGAAATCCGCTTCCTCTTCAACAATGGCGCCAGATCTACTCCACTCCGTCACCAACTCCCTCCCGAAAACCCTAAAGCTAAAAACGAAGCAACAAGAGCTTCTGATCCGCGTAACAACCCTATTCCTAATCTACGTGCTCGCATTCATCACGCGACTCTTCAGCGTCCTCCGTTACGAGTCCATGATCCACGAGTTTGACCCTTACTTCAACTACCGAACAACCCTATACCTAACCGAACACGGTTTCTCCGAGTTCTGGAACTGGTTCGACTCGGACTCNTGGTACCCACTCGGACGCATCATCGGCGGAACCCTATACCCTGGACTCATGCTAACCGCAGCGTTACTCTACAAAACTCTCCGGTTCCTCCGGTTCGCCGTTCACATCCGCGAGGTCTGTGTCCTAACCGCACCGTTTTTCGCCTCAAATACCGCGATCGTCGCCTATTTCTTCGGTAAGGAGGTTTGGGACACCGGCGCCGGTATNGCCGCCGCGGCGCTCATCGCGATTTGCCCCGGTTACATATCGCGGTCNGTCGCCGGGTCCTACGACAACGAGGGCGTCGCGATCTTCGCCTTGCTGCTCACGTTTTATTTGTTTGTTAAGGCGGTTAACACAGGTTCGTTGGCGTGGTCGCTGGCGTCGGCGTTTGGGTACTTCTACATGGTTTCGGCGTGGGGCGGTTATGTTTTCATCATCAATTTGGTGCCGCTTTATGTTTTGGTATTGTTGGTGACTGGGAGGTACTCGATGAGGCTTTATGTGGCTTATAATTGCATGTATATTTTGGGGATGTTGCTTGCCATGCAGATTAGGTTTGTTGGGTTCCAGCATGTTCAGTCTGGGGAACACATGGCTGCTTTGGGAGTGTTTTTCTTGCTCCAGGTGTTTTTCTTCTTGGATTGGGTAAGACATTTGCTTGGAGATGCAAAATTGTTTCAAGCGTTTTTGAGGATCACTGTAACTGGTGCAGTTGGTGTTGGTGCCATTGCCTTGGGAGTAGGCACAGCATCTGGTTACATATCTCCGTGGACTGGAAGGTTTTACTCCTTGCTTGATCCAACATATGCTAAGGATCACATTCCAATTATTGCATCTGTCTCTGAGCATCAGCCAACTGCTTGGTCATCCTTCATGTTTGATTTCCATATATTGCTGTTCCTTTTCCCTGCTGGGCTCTATTTTTGTTTCAAGCGCTTGTCAGATGCCACAATCTTCATAGTTATGTATGGTCTTACAAGCATGTATTTTGCTGGTGTTATGGTTCGATTGATTCTTGTTGCTACCCCTGCTGTATGCCTCATTAGTGCTATTGCGGTTTCTGCCACTGTGAAGAATTTGACTCGGGTGGTGAGGGCCAAAAGCCAAACCNTCCAAAGTGGTTCTAGTAAAGGAACTAGTGCTGCAAAAGGTTCTTCCAAGGGTGTAGTTGATAACTCCCAGCCTTTCCAAAAGAACGGTGCTATTGTGTTACTTCTCGGTGCCTTTTATCTGCTTAGTAGATATGCTATTCACTGTACTTGGGTCACATCAGAGGCATACTCATCTCCCTCAATTGTCTTGGCTGCAAGGGGTGCCCATGGCAACAGGGTCATCTTTGATGATTATCGTGAGGCTTACTTCTGGCTTCGCCAGAACACTCCACCAGATGCCAAGGTGATGTCATGGTGGGATTATGGTTATCAAATCACTGCCATGGGAAACAGAACAGTTATTGTTGACAATAACACCTGGAACAATACACACATAGCAACTGTTGGGCGTGCAATGTCATCTTATGAGGATGAGGNTTATGAGATAATGAGATCGCTTGATGTTGACTATGTATTAGTCGTGTTTGGTGGTGTTACTGGTTATTCTTCGGACGATATTAATAAATTTCTATGGATGGTGAGAATTGGTGGCGGGGTTTTTCCTGTAATAAAGGAACCTGATTACCTTGTCAATGGAGAGTATCGTGTGGATAAAGGAGCAGCTCCAAAGATGTTGAACTGTCTTATGTACAAGCTGTCTTATTATCGGTTTGGGGAGCTGACCACAGAATATGGCAAACCTCCTGGGTTCGATCGTGCAAGAGGCGTTGAAATTGGAAATAAGGACATAAAACTGGAGTATTTGGAGGAGGCGTTTACTACCCAGAATTGGATAGTTCGTATTTATAAAGTGAAACCACCTAAAAACAGGTGGTGAGCCTAACTTTTGATTTCCCAAAACCCAAAAAAAAAAAGTTTTTTTTTCTGCGGGAAATGATAGCATCCTAGTGAACATGAGAGCTGAAAATTTGCTAGCTATGTTATAGATTGTGGACTATTTTTTGAAGTATTTATATGTAGAATTCTGTCAAGTTAGTTTTGTGGATTTTTTTTAATATATTACAGTTCATTTCAATTGTGCAATTTAACGTACATGCTCGGTTTTGTTTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	66072	70717	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT66

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07151	STT3	EC:2.4.99.18	N-Glycan biosynthesis	map00510
			Various types of N-glycan biosynthesis	map00513
			Protein processing in endoplasmic reticulum	map04141

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component GO:0016020 membrane molecular_function GO:0004576 oligosaccharyl transferase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017818.1	PF02516.9	STT3	41	580	1.90E-110

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.494
SRR1783600	control	54.678
SRR1783602	moderate drought stress	40.363
SRR1811619	moderate drought stress	39.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	65.584
DRR006520	Root Summer glycyrrhizin high producing strain	65.012
DRR006521	Root Winter glycyrrhizin high producing strain	28.106
DRR006522	Root Winter glycyrrhizin high producing strain	27.399
DRR006523	Root Summer glycyrrhizin low producing strain	39.819
DRR006524	Root Summer glycyrrhizin low producing strain	39.621
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.404
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.207

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	88.741
SRR2868004	Drought Stress(Tissue:root)	57.886
SRR2967015	Control (Tissue:root)	60.435

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	29.309
SRR9715740	Leave	24.472
SRR9715741	Leave	31.291
SRR9715739	Root	49.174
SRR9715742	Root	69.282
SRR9715743	Root	65.480

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.586
SRR8749028	MeJA induced 9h	33.041
SRR8749029	MeJA induced 9h	30.828
SRR8749030	Uninduced	17.973
SRR8749031	Uninduced	10.618
SRR8749032	Uninduced	7.957

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	72.841
SRR8400027	Control-Root	71.112