Gene detail information of Glyur000399s00017819.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G23250.11.00E-145Succinyl-CoA ligase, alpha subunit
NRXP_004515280.10PREDICTED: probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [Cicer arietinum]
COGYP_006372429.18.00E-139succinyl-CoA synthetase subunit alpha [Tistrella mobilis KA081020-065]
Swissprottr|Q8GTQ9|SUCA1_SOLLC0Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial (Precursor)
trEMBLtr|G7KKB4|G7KKB4_MEDTR0Succinyl-CoA ligase [ADP-forming] subunit alpha-2 {ECO:0000313|EMBL:AES76368.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003997292378725-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01899LSC1 EC:6.2.1.4 6.2.1.5 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Propanoate metabolismmap00640


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0048037  cofactor binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000399s00017819.1PF02629.14CoA_binding331268.50E-32
Glyur000399s00017819.1PF00549.14Ligase_CoA1793027.70E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control49.902
SRR1783600control48.912
SRR1783602moderate drought stress30.549
SRR1811619moderate drought stress29.707

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain67.266
DRR006520Root Summer glycyrrhizin high producing strain66.597
DRR006521Root Winter glycyrrhizin high producing strain42.253
DRR006522Root Winter glycyrrhizin high producing strain41.306
DRR006523Root Summer glycyrrhizin low producing strain58.170
DRR006524Root Summer glycyrrhizin low producing strain57.884
DRR006525Leaf Summer glycyrrhizin high producing strain51.350
DRR006526Leaf Summer glycyrrhizin high producing strain51.061

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)162.114
SRR2868004Drought Stress(Tissue:root)113.001
SRR2967015Control (Tissue:root)101.653

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave91.361
SRR9715740Leave70.803
SRR9715741Leave82.595
SRR9715739Root71.481
SRR9715742Root81.635
SRR9715743Root79.139

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.037
SRR8749028MeJA induced 9h53.375
SRR8749029MeJA induced 9h64.570
SRR8749030Uninduced37.063
SRR8749031Uninduced33.372
SRR8749032Uninduced44.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root101.697
SRR8400027Control-Root100.223

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved