Gene detail information of Glyur000399s00017822.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G18905.12.00E-54Transducin/WD40 repeat-like superfamily protein
NRXP_003544096.17.09E-85PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Glycine max]
COGYP_007054747.12.00E-08WD40 repeat-containing protein [Rivularia sp. PCC 7116]
Swissprottr|P43254|COP1_ARATH1.00E-09E3 ubiquitin-protein ligase COP1
trEMBLtr|I1M681|I1M681_SOYBN1.00E-85Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G00890.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003998926193956+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000399s00017822.2PF00400.27WD4053866.50E-09
Glyur000399s00017822.2PF00400.27WD40921120.0049


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.470
SRR1783600control0.332
SRR1783602moderate drought stress2.186
SRR1811619moderate drought stress2.556

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.920
DRR006520Root Summer glycyrrhizin high producing strain3.733
DRR006521Root Winter glycyrrhizin high producing strain1.119
DRR006522Root Winter glycyrrhizin high producing strain1.247
DRR006523Root Summer glycyrrhizin low producing strain0.741
DRR006524Root Summer glycyrrhizin low producing strain0.788
DRR006525Leaf Summer glycyrrhizin high producing strain3.133
DRR006526Leaf Summer glycyrrhizin high producing strain3.489

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.528
SRR2868004Drought Stress(Tissue:root)2.984
SRR2967015Control (Tissue:root)2.363

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.107
SRR9715740Leave0.000
SRR9715741Leave0.102
SRR9715739Root6.848
SRR9715742Root2.300
SRR9715743Root3.259

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.429
SRR8749028MeJA induced 9h2.176
SRR8749029MeJA induced 9h1.497
SRR8749030Uninduced0.857
SRR8749031Uninduced1.173
SRR8749032Uninduced1.929

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.296
SRR8400027Control-Root8.195

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved