Gene detail

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Gene detail information of Glyur000399s00017825.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25930.1	6.00E-85	Protein kinase family protein with leucine-rich repeat domain
NR	KHN40381.1	0	LRR receptor-like serine/threonine-protein kinase HSL2 [Glycine soja]
COG	YP_001192956.1	6.00E-18	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|P47735\|RLK5_ARATH	2.00E-72	Receptor-like protein kinase 5 (Precursor)
trEMBL	tr\|I1J4I6\|I1J4I6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01090.1}

Sequence

Transcript Sequence

>Glyur000399s00017825.1
ATGTTTGAGTCAAACTTGGTTGGTGGAATTCCTGGAGCAATTGGGCAAGTGATAGCTTTGGAGAAATTGGATATATCGATAAACGGTTTAGCCGGACGAATTCCGAATGGTTTGTTCAAGATGATGAATCTGAGGATATTGTTTCTTTCCAGGAACAGTCTCTCTGGGGAGATACCAAGTGTGGTTGAAGCATTGAATTTGACCATAATTGATCTTACAAGGAATCAACTTTCAGGGAAAACACCAGATGATTTTGGGAAGCTACAAAATTTTAAGGTCTTTATGAACAACTTGTCAGGTACACTTCCTCCAGATCTTGGCCTTTACTCAAGGCTTAGAAAATCACTTGGAAACTACAATTTGTTGGAGCTGAAAATTTACAATATTGAGTTTTCTGGTAACATTCCCAGTGGTCTTTGGACTAATATCAATTTGGTGAATTTCATGAAAATCAATTCTCTGGCCAAACCTTCTACACCTCCTAGACTCACCAATCTCAATCTATCTTCCAATCACTTGACGGGAAGGGTTCCTCGTGAATTTGAAAATTCTGCACATGCTACCAGATTTTTGAACAATTCTGGTCTCTCTGCTGATATCCCAACACTGAACCTTACCTTGTGCAATTCCAGCCCTCAAAGTCAAAGCAAAGACTCATCTTTATCTCCTGCTTTAATCATAACCATTGTGGTGGTAGTAGTGGCCATCTTAATGACAGTGTCCTCAATGACAGAAAATATTGTTATTGGCAATGGTGGATATGGTACAATTTGGGAGAACAAAAAGTTAGACCAGAATCTTGAGAAATCCTTTCATACTGAGGTTAGAATGTTGAGCAACATTCGCCACAAGAACATTGTGAAGTTGTTGTGTTGTATCTCTAACGAGGATACCATGCTCCTTGTGTATGAGTATGTGGAGAACCGTAGCCTTGACAGGTGGCTTCACAAGAAGATTATTAAGTCATCAAGTGTGTCAGGTTCAGTCCATCATGTTGTGCTTGATTGGCCAAAGGGATTGCAAATATCAATTGGGGTGGCACAAGGATTGAGCTACATGTACCATGAATGCTCACCACCTATTTTTCGTAGAGATGTGAAATCAAGCAACATCCTTTTGGATGCACAATTCAATGCAAAAGTTGCTAATTTTGGCCTTGCTAGGATGTTAATCAAGGTAGGGGAACTTGCTACCATGTCAGCTGTGATCGGCTCATTTGGCTATATGGCTCCAAAATATGTTCAAACTACTCGAGTGAGTGAAAAGATTGATGTGTTTAGCTTTGGGGTTATCCTATCGGAACTAACAACTGGGAAAGAAGCTAATTATGGTGATGAGCACTCATCTCTTGCGGAGTGGGCTTGGAGGCACATTCATGCAGGAAGCAACATAGAAGAGCTGCTAGACAAAGAAGTCATGGAACCAAGTCACTTGGATGGAATGTTTAAGGTTTTCAAACTTGGGGTCTTGTGTACTGCAACACTTTCTTCTAGTAGACCTTCCATGAAGGAGGTCTTGCAAGTATTGCTCCAGGATAATCATTTGCCAATGGAGAGAGAAATATTGACCAGTGTGATGTTGCTCACTTGCTCCCCTTCTTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00399	110464	112892	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000399s00017825.1	PF00560.28	LRR_1	43	60	0.37
Glyur000399s00017825.1	PF00560.28	LRR_1	66	88	0.66
Glyur000399s00017825.1	PF00560.28	LRR_1	162	183	0.28
Glyur000399s00017825.1	PF00069.20	Pkinase	262	452	3.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.099
SRR1783600	control	0.072
SRR1783602	moderate drought stress	0.402
SRR1811619	moderate drought stress	0.487

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.324
DRR006520	Root Summer glycyrrhizin high producing strain	0.297
DRR006521	Root Winter glycyrrhizin high producing strain	0.565
DRR006522	Root Winter glycyrrhizin high producing strain	0.560
DRR006523	Root Summer glycyrrhizin low producing strain	0.363
DRR006524	Root Summer glycyrrhizin low producing strain	0.327
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.392

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.914
SRR2868004	Drought Stress(Tissue:root)	1.254
SRR2967015	Control (Tissue:root)	0.953

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.464
SRR9715740	Leave	0.323
SRR9715741	Leave	1.007
SRR9715739	Root	0.136
SRR9715742	Root	0.698
SRR9715743	Root	0.919

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.301
SRR8749028	MeJA induced 9h	2.171
SRR8749029	MeJA induced 9h	1.222
SRR8749030	Uninduced	2.411
SRR8749031	Uninduced	1.815
SRR8749032	Uninduced	1.969

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.425
SRR8400027	Control-Root	1.483