Gene detail information of Glyur000400s00020163.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48190.10ataxia-telangiectasia mutated
NRAES71519.20ataxia telangiectasia mutated protein, putative [Medicago truncatula]
Swissprottr|Q9M3G7|ATM_ARATH0Serine/threonine-protein kinase ATM
trEMBLtr|G7J5G3|G7J5G3_MEDTR0Ataxia telangiectasia mutated protein, putative {ECO:0000313|EMBL:AES71519.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold004003549890745-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04728ATM, TEL1 EC:2.7.11.1 Homologous recombination map03440
NF-kappa B signaling pathwaymap04064
FoxO signaling pathwaymap04068
Cell cyclemap04110
Apoptosismap04210
Apoptosis - flymap04214
p53 signaling pathwaymap04115
Transcriptional misregulation in cancersmap05202
MicroRNAs in cancermap05206
HTLV-I infectionmap05166
Platinum drug resistancemap01524


Gene Ontology

molecular_function

GO:0005488  binding

GO:0005515  protein binding

GO:0016772  transferase activity, transferring phosphorus-containing groups

GO:0016773  phosphotransferase activity, alcohol group as acceptor



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000400s00020163.1PF00454.22PI3_PI4_kinase250925688.50E-07
Glyur000400s00020163.1PF00454.22PI3_PI4_kinase261827161.10E-23
Glyur000400s00020163.1PF02260.15FATC277228011.70E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.773
SRR1783600control1.785
SRR1783602moderate drought stress2.694
SRR1811619moderate drought stress2.670

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.445
DRR006520Root Summer glycyrrhizin high producing strain3.481
DRR006521Root Winter glycyrrhizin high producing strain3.162
DRR006522Root Winter glycyrrhizin high producing strain3.082
DRR006523Root Summer glycyrrhizin low producing strain4.778
DRR006524Root Summer glycyrrhizin low producing strain4.925
DRR006525Leaf Summer glycyrrhizin high producing strain2.406
DRR006526Leaf Summer glycyrrhizin high producing strain2.439

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.293
SRR2868004Drought Stress(Tissue:root)9.709
SRR2967015Control (Tissue:root)9.444

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.153
SRR9715740Leave0.838
SRR9715741Leave0.783
SRR9715739Root0.398
SRR9715742Root3.128
SRR9715743Root2.909

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.417
SRR8749028MeJA induced 9h8.632
SRR8749029MeJA induced 9h4.027
SRR8749030Uninduced3.456
SRR8749031Uninduced1.952
SRR8749032Uninduced1.791

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.475
SRR8400027Control-Root7.504

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved