Gene detail information of Glyur000400s00020170.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G62940.1 | 2.00E-34 | Dof-type zinc finger DNA-binding family protein |
| NR | AES71511.2 | 9.23E-160 | Dof domain zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9FM03|DOF56_ARATH | 1.00E-58 | Dof zinc finger protein DOF5.6 |
| trEMBL | tr|G7J5F5|G7J5F5_MEDTR | 3.00E-160 | Dof domain zinc finger protein {ECO:0000313|EMBL:AES71511.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00400 | 111562 | 113512 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000400s00020170.1 | PF02701.10 | zf-Dof | 55 | 115 | 1.10E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.507 |
| SRR1783600 | control | 1.350 |
| SRR1783602 | moderate drought stress | 1.167 |
| SRR1811619 | moderate drought stress | 1.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.246 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.359 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.355 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.904 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.595 |
| SRR2967015 | Control (Tissue:root) | 10.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.863 |
| SRR9715740 | Leave | 0.337 |
| SRR9715741 | Leave | 0.697 |
| SRR9715739 | Root | 1.379 |
| SRR9715742 | Root | 1.173 |
| SRR9715743 | Root | 1.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.709 |
| SRR8400027 | Control-Root | 4.586 |