Gene detail

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Gene detail information of Glyur000401s00023653.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13635.2	5.00E-92	DNA glycosylase superfamily protein
NR	XP_004509952.1	1.37E-175	PREDICTED: probable GMP synthase [glutamine-hydrolyzing]-like [Cicer arietinum]
COG	YP_001832307.1	1.00E-47	DNA-3-methyladenine glycosylase I [Beijerinckia indica subsp. indica ATCC 9039]
trEMBL	tr\|I1J6K9\|I1J6K9_SOYBN	2.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G20740.1}

Sequence

Transcript Sequence

>Glyur000401s00023653.1
CAACCAACTTCAACATCCACCTCATTTATAACAGTACAACTAATTCCCTCTTCTTCTTCTCTCCACTACTATGTCTAAAGCAAACATTAGAAAACNTGCTCTGGAGAGGAGCAGAAGTTTCAAAGAGACACAGAAAACATTGGACCAACAAAGCTTTTTCCCAAAAAGCCTCAAGAAAGTGTACCCAATTGGGCTTCAGAAAAGCACNTCATCTCTATCTTTATCTTCAGTTTCATTGTCTTTGTCACAAAACTCAAATGACTCTTCTCAGGCTGATTCCTTGACTCCATTGGATGAGAAGATTTCATTGGCACTTCGTTTGATTTCAGTTTCTTCGCCACGTGGAGGAAGAAGAGAACCTTCAGTAGCAGCTAAAACATTACAGCAACACCAACAGCAAAGTCCACTAGTAGTGACCACTGAGCCAGGGGAATTGAAAAGATGCAACTGGATCACAAAGAACAGTGATAAGGTGTACATAGAATTTCATGATGAGTGCTGGGGAGTTCCAGCTTATGACGACAACAAATTGTTTGAGCTGCTTGCATTGTCTGGATTGCTCATGGACTACAATTGGACAGAAATTCTTAAAAGAAAGGAAACACTTAGAGAAGTTTTTGCTGGATTTGATCCTCATACTGTTGCCAAAATGGAGGAAAAGGAAATCATGGAGATAGCATCAAACAAAGCACTTTCTTTAGCCGATAGCAGAATTGTAAAGGAATGTGGATCATTTAGTAGCTACATATGGGGTTANGTAAATCACAAACCAATAATAAACAGATACAAATACCCAAGAAATGTCCCATTAAGGAGTCCAAAAGCAGAGGCCCTTAGCAAGGACTTGGTTAAACGTGGGTTTCGGTTCGTGGGTCCAGTGATAGTGCACTCTTTTATGCAAGCTGCAGGATTGACCATTGATCACCTTGTGGATTGTTATAGGCATAGTGAATGTGTAAGCCTTGCTGAAAGACCTTGGAGGCATATCTAACATGCAATTGCATTGATTGGTTCACTCCTGTTAGAATTTTTCAGTTTGGTTTTGTAAGTGCAGCTACTCAATTTTCCAAACAACCNAGCAAGTAACAACATTAGTGTTGTTTGTATAATTCCTTTGTTTCTTTTGTTTATTTTTTTGGGTTTTTGGCTTTTTTTTCCTGAACTTTTTTCTTCCTATACTTAATTTCAATCCTGTGTAATACTTATCAATCCCTATCTTGTCACTATCAATAAATGAAACANAAACAAAAGGAAGAAAGAAAATGTGTGTTATATGATTAGAGTGATTATCAGAGAGGCAAAAGCCACTTGTATGTAACTACCAGACTACTATTTGGTATGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00401	80629	84444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01246	tag	EC:3.2.2.20	Base excision repair	map03410

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0006284 base-excision repair

molecular_function GO:0003824 catalytic activity GO:0008725 DNA-3-methyladenine glycosylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000401s00023653.1	PF03352.8	Adenine_glyco	127	293	4.80E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.974
SRR1783600	control	0.961
SRR1783602	moderate drought stress	0.584
SRR1811619	moderate drought stress	0.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.027
DRR006520	Root Summer glycyrrhizin high producing strain	3.877
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.048
DRR006524	Root Summer glycyrrhizin low producing strain	2.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.891
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.895

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	31.753
SRR2868004	Drought Stress(Tissue:root)	20.499
SRR2967015	Control (Tissue:root)	23.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.906
SRR9715740	Leave	1.159
SRR9715741	Leave	0.949
SRR9715739	Root	0.333
SRR9715742	Root	2.066
SRR9715743	Root	1.381

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.106
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	12.287
SRR8400027	Control-Root	12.549