Gene detail information of Glyur000404s00017722.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G24180.20Beta-glucosidase, GBA2 type family protein
NRXP_007144168.10hypothetical protein PHAVU_007G134300g [Phaseolus vulgaris]
COGYP_590763.13.00E-90hypothetical protein Acid345_1688 [Candidatus Koribacter versatilis Ellin345]
trEMBLtr|V7BEC6|V7BEC6_PHAVU0Non-lysosomal glucosylceramidase {ECO:0000256|PIRNR:PIRNR028944}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0040463510570-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH116


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17108GBA2 EC:3.2.1.45 Sphingolipid metabolism map00600
Other glycan degradationmap00511


Gene Ontology

biological_process

GO:0006665  sphingolipid metabolic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0003824  catalytic activity

GO:0004348  glucosylceramidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000404s00017722.1PF12215.3GBA2_N934021.00E-57
Glyur000404s00017722.1PF04685.8DUF6085429049.90E-148


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.030
SRR1783600control4.793
SRR1783602moderate drought stress5.227
SRR1811619moderate drought stress5.240

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.704
DRR006520Root Summer glycyrrhizin high producing strain7.800
DRR006521Root Winter glycyrrhizin high producing strain18.574
DRR006522Root Winter glycyrrhizin high producing strain18.252
DRR006523Root Summer glycyrrhizin low producing strain7.563
DRR006524Root Summer glycyrrhizin low producing strain7.377
DRR006525Leaf Summer glycyrrhizin high producing strain4.337
DRR006526Leaf Summer glycyrrhizin high producing strain4.509

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.202
SRR2868004Drought Stress(Tissue:root)32.953
SRR2967015Control (Tissue:root)30.136

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.547
SRR9715740Leave9.082
SRR9715741Leave14.022
SRR9715739Root2.589
SRR9715742Root11.836
SRR9715743Root10.323

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.405
SRR8749028MeJA induced 9h17.108
SRR8749029MeJA induced 9h8.911
SRR8749030Uninduced13.619
SRR8749031Uninduced24.116
SRR8749032Uninduced14.594

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.580
SRR8400027Control-Root14.312

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved