Gene detail information of Glyur000404s00017725.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06190.1 | 2.00E-176 | BTB-POZ and MATH domain 2 |
| NR | XP_006604419.1 | 0 | PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Glycine max] |
| Swissprot | tr|Q9M8J9|BPM2_ARATH | 0 | BTB/POZ and MATH domain-containing protein 2 |
| trEMBL | tr|I1JNR6|I1JNR6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G30740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 22469 | 25802 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017725.1 | PF00917.21 | MATH | 56 | 171 | 1.70E-10 |
| Glyur000404s00017725.1 | PF00651.26 | BTB | 198 | 314 | 3.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.288 |
| SRR1783600 | control | 21.186 |
| SRR1783602 | moderate drought stress | 20.209 |
| SRR1811619 | moderate drought stress | 20.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 32.799 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.631 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.901 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.956 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 56.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.719 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 25.428 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.183 |
| SRR2967015 | Control (Tissue:root) | 32.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 48.695 |
| SRR9715740 | Leave | 40.897 |
| SRR9715741 | Leave | 75.642 |
| SRR9715739 | Root | 26.338 |
| SRR9715742 | Root | 55.925 |
| SRR9715743 | Root | 48.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.082 |
| SRR8749028 | MeJA induced 9h | 24.113 |
| SRR8749029 | MeJA induced 9h | 28.186 |
| SRR8749030 | Uninduced | 25.316 |
| SRR8749031 | Uninduced | 43.580 |
| SRR8749032 | Uninduced | 44.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.745 |
| SRR8400027 | Control-Root | 35.878 |