Gene detail information of Glyur000404s00017733.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G48150.1 | 9.00E-44 | glutathione peroxidase 4 |
| NR | AES60932.2 | 4.05E-76 | glutathione peroxidase [Medicago truncatula] |
| COG | YP_005516832.1 | 4.00E-37 | glutathione peroxidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] |
| Swissprot | tr|Q06652|GPX4_CITSI | 5.00E-55 | Probable phospholipid hydroperoxide glutathione peroxidase |
| trEMBL | tr|G7IEG3|G7IEG3_MEDTR | 2.00E-76 | Glutathione peroxidase {ECO:0000256|RuleBase:RU000499} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 51156 | 52800 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00432 | gpx | EC:1.11.1.9 | Arachidonic acid metabolism | map00590 |
| Glutathione metabolism | map00480 | |||
| Thyroid hormone synthesis | map04918 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017733.1 | PF00255.14 | GSHPx | 3 | 88 | 5.70E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.702 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.615 |
| SRR2967015 | Control (Tissue:root) | 9.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.045 |
| SRR9715740 | Leave | 0.041 |
| SRR9715741 | Leave | 0.433 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.114 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.183 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.255 |
| SRR8400027 | Control-Root | 0.758 |