Gene detail information of Glyur000404s00017737.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19040.1 | 4.00E-79 | isopentenyltransferase 5 |
| NR | XP_004495223.1 | 0 | PREDICTED: adenylate isopentenyltransferase 3, chloroplastic-like [Cicer arietinum] |
| COG | YP_002315869.1 | 2.00E-26 | tRNA delta(2)-isopentenylpyrophosphate transferase [Anoxybacillus flavithermus WK1] |
| Swissprot | tr|Q93WC9|IPT3_ARATH | 6.00E-105 | Adenylate isopentenyltransferase 3, chloroplastic (Precursor) |
| trEMBL | tr|Q1W5W3|Q1W5W3_LOTJA | 0 | Isopentyl transferase {ECO:0000313|EMBL:ABG74607.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 83059 | 84033 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10760 | IPT | EC:2.5.1.27 2.5.1.112 | Zeatin biosynthesis | map00908 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000404s00017737.1 | PF01715.12 | IPPT | 66 | 140 | 1.30E-21 |
| Glyur000404s00017737.1 | PF01715.12 | IPPT | 148 | 255 | 1.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.259 |
| SRR1783600 | control | 0.263 |
| SRR1783602 | moderate drought stress | 0.900 |
| SRR1811619 | moderate drought stress | 0.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.395 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.897 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.907 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.622 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.202 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.746 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.427 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.737 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.823 |
| SRR2967015 | Control (Tissue:root) | 1.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.337 |
| SRR9715740 | Leave | 40.616 |
| SRR9715741 | Leave | 13.566 |
| SRR9715739 | Root | 4.951 |
| SRR9715742 | Root | 7.695 |
| SRR9715743 | Root | 5.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.069 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.249 |
| SRR8400027 | Control-Root | 0.244 |