Gene detail information of Glyur000404s00017748.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27310.1 | 1.00E-34 | F-box family protein |
| NR | XP_004495210.1 | 0 | PREDICTED: F-box protein At2g27310-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9XIN8|FB119_ARATH | 8.00E-39 | F-box protein At2g27310 |
| trEMBL | tr|A0A072VKT4|A0A072VKT4_MEDTR | 0 | F-box GID2-like protein {ECO:0000313|EMBL:KEH42639.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00404 | 118660 | 121630 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.086 |
| SRR1783600 | control | 1.005 |
| SRR1783602 | moderate drought stress | 1.153 |
| SRR1811619 | moderate drought stress | 1.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.019 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.456 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.618 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.540 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.438 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.962 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.377 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.499 |
| SRR2967015 | Control (Tissue:root) | 12.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.895 |
| SRR9715740 | Leave | 4.564 |
| SRR9715741 | Leave | 3.666 |
| SRR9715739 | Root | 5.092 |
| SRR9715742 | Root | 5.325 |
| SRR9715743 | Root | 6.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.551 |
| SRR8749028 | MeJA induced 9h | 2.908 |
| SRR8749029 | MeJA induced 9h | 3.606 |
| SRR8749030 | Uninduced | 2.419 |
| SRR8749031 | Uninduced | 1.077 |
| SRR8749032 | Uninduced | 2.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.657 |
| SRR8400027 | Control-Root | 6.829 |